Scaffold Ga0209723_1025179

Overview

Basic Information

• Taxon OID: 3300026311
• Scaffold ID: Ga0209723_1025179
• Source Dataset Name: Anaerobic biogas reactor microbial communites from Washington, USA - Biogas_R2 time_0 SIP DNA (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3557
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (25.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Bioreactor → Anaerobic → Unclassified → Unclassified → Anaerobic Biogas Reactor → Anaerobic Biogas Reactor Microbial Communites From Washington, Usa

Source Dataset Sampling Location

• Location Name: Washington, USA
• Coordinates
  • Lat. (^o): 47.6525
  • Long. (^o): -122.3049

Associated Families

Family	Category	Number of Sequences	3D Structure?
F065813	Metagenome / Metatranscriptome	127	N
F073596	Metagenome / Metatranscriptome	120	N
F095525	Metagenome / Metatranscriptome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209723_10251794	F065813	N/A	MTPLISFFGWFDIIVVTPFVLYFGYKGVKWIIGKLKKQPQEGEIETPDVES
Ga0209723_10251795	F073596	N/A	MNVFEKIKLWFTSISKIVKFLTDTFGEAKILKDKQANFKDWVEFIIAFIKDALQYADEIAALAQSQPVQTKGQVIKAVKQDKSISTNYRTAYFKEKAKNFNK
Ga0209723_10251796	F095525	N/A	MKALTDIGLVALGLVVGIVIGQCLQYNKQRIENFINKLKKK