Scaffold Ga0209239_1003999

Overview

Basic Information

• Taxon OID: 3300026310
• Scaffold ID: Ga0209239_1003999
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_2_20cm (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8532
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (63.64%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Archaea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: Angelo Coastal Reserve, California, USA
• Coordinates
  • Lat. (^o): 39.73825
  • Long. (^o): -123.6301

Associated Families

Family	Category	Number of Sequences	3D Structure?
F030030	Metagenome / Metatranscriptome	186	Y
F042845	Metagenome / Metatranscriptome	157	Y
F046962	Metagenome / Metatranscriptome	150	Y
F061700	Metagenome / Metatranscriptome	131	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209239_100399911	F061700	N/A	MCDKCHRFFVISYEKNEKGEVVEVGHELDIHVKSSGIVRVDEGEQRRGFERTPPARKYEEETCW
Ga0209239_10039997	F046962	GGA	MEEMANSGYPSETTNRTIPQDTMTNDQLRNLLAELISSSASLNVRVWLDGVYTDIENAGAHREWMKGREVYFKVEGKVDGQNSLEEASHRSD
Ga0209239_10039998	F042845	AGGAG	METRKWKAFLRMSGETTVDSSPDILIEFKAMVKYLKSIGVDYSIVVQVEADQPERSQTLAMEQPPRRPETGQLGD
Ga0209239_10039999	F030030	AGGAG	MAKFIMSIGDNAYDILSNEAKNRDVTVQQLLRAVVVPDWIKQNANGEPPIETRSHPIRSSVYGVDTSNSGMLVSPVARLRR