Scaffold Ga0209239_1000040

Overview

Basic Information

• Taxon OID: 3300026310
• Scaffold ID: Ga0209239_1000040
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_2_20cm (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 76905
• Total Scaffold Genes: 89
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 66 (74.16%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Archaea (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: Angelo Coastal Reserve, California, USA
• Coordinates
  • Lat. (^o): 39.73825
  • Long. (^o): -123.6301

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004152	Metagenome	450	Y
F009674	Metagenome / Metatranscriptome	314	Y
F017615	Metagenome	239	Y
F091694	Metagenome / Metatranscriptome	107	N
F104542	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209239_100004023	F104542	GAG	VPYYFYSYQIWYIVASALLLVCFVSLPVLSFYHQSKTVQDKKASLSMKIISVSWASFGVLTLFQIAAGGLFLPISESIGSVADSLLFMLIAFALREPTILGRIVTSGETVSQAVYSNPSIDTIVLYNTESDRRSLVETFVKDGLATGQDVVCQVTKAEVPFYRAILKGSGLMDSSLGAHSVTIQPIETTIASKAIHSSQTVLVPSERRELVDLDELDLDHCRNIIGTITIPGSIPRTKHVGRIWALNVEGAHAGILDLLQEANPTARVIDLAMQQDAFSSVFNMKHQDILGNRLLLEYEPTSDYEEVVQKFVREFQANGESVAIFTSAGSPIYRQFRDQRNISLFSFSTKTSSPARLSDEQVLLPERDTSLLLDAVDKLLQALSKKRIGIVFDVFTDVILSQGFERAYGVLSSVVEMTESEVASILVLINYGALEPRVLGAVQGLFRSQLRFNFDGPKVIKLQGGRQASSYDEEPLTRVQESSGAIRT
Ga0209239_100004054	F091694	AGGA	MPPRPPTTRIGVKRIVIEVNRDLTVEQLEILDDALKRAGLVKETKVTFHNREPHKARTPRVSHPTWRIGHDSQSSSLSTH
Ga0209239_100004058	F017615	N/A	MPITVDDHVCGGLQMEFWTKLAMFIGLLFIVSPLVLRMYDFVDNSTTLPFFVIGVILVVIGERNRVRLEENRVSAD
Ga0209239_100004074	F004152	N/A	VADDLHDDEVSSLVKYMTAMSTGQITQHKKLVEVAGLTNKKIKFLLHKFLYARHLAGYGVLDTAGNFEIVHLKPEEKHTEQHEILSPIMALPVTVIPHWVKPSDMIESQGQPPKKIRYKK
Ga0209239_100004085	F009674	GAG	MLRLRFDDATIVFHLKAAKIRNAQQILDSVLDEARQEAIARLSSRRRYLQG