Scaffold Ga0209239

Basic Information
Taxon OID	3300026310 Open in IMG/M
Scaffold ID	Ga0209239_1000006 Open in IMG/M
Source Dataset Name	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_2_20cm (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Ga0209239_1000006 Open in IMG/M

Source Dataset Name

Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_2_20cm (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	147006
Total Scaffold Genes	152 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	114 (75.00%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (100.00%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

147006

Total Scaffold Genes

152 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

114 (75.00%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (100.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Archaea	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Archaea

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location Name	Angelo Coastal Reserve, California, USA
Coordinates	Lat. (^o)	39.73825	Long. (^o)	-123.6301	Alt. (m)	Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

Angelo Coastal Reserve, California, USA

Coordinates

Lat. (^o)

39.73825

Long. (^o)

-123.6301

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000611	Metagenome / Metatranscriptome	987	Y
F006583	Metagenome / Metatranscriptome	369	N
F012005	Metagenome / Metatranscriptome	284	N
F017113	Metagenome / Metatranscriptome	242	Y
F018143	Metagenome / Metatranscriptome	236	N
F079889	Metagenome / Metatranscriptome	115	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209239_1000006103	F012005	GGAGG	LVAGLLAYSMIPNFHIVPLQSAQMIVNPKPIPVSSASLSETPENVTLIPGRENELLVNLTVSTQSGLPSSIQFKLFPEGSFQSCMLNAEQRGCLVNQTVSNSSIRIPLNASTTYYFGFDNRGSNSSKQVLLSAILVSSSTSTLVARDGGLNFAGLGVSLIGLLVTLYGVFAKTVIPWE
Ga0209239_1000006130	F006583	GAGG	VNWQMVNCSACSGIIHRDELVSAAFTQEAQRNYFHKDCEGKAEYLSRWREEAPWAFKPVRLTVADWVTCSPKKHLGIWQSIFIARRDEDIWCPDCGLKIARHEGLTCTACGSHAIVVGVETTKMVFTHRQPLYKLLLHCIEKGEDSASYAISSGFTPVAITSRKKNEASDSQATVMMLEYEPKENLKKGLKV
Ga0209239_100000615	F000611	AGTAG	MQTNMNFPTYVFATVNPGRSTKVVDELKRNSQIDIIAPVTGRWDLVLRLKPNTPHNIYQTVKEIREISDVRTTDTHTGFDGMQPSKKLESQMALGFSLLNVQHTSVENTIKQLSNIPGFVEACTVPGQFDIVALWQARTSEDIVKNSFEKVTNLQGLFSSETLLAHLPFFNA
Ga0209239_10000062	F018143	GGA	LVVPKFMLSMREKAFAVISSEARNRGVTVQELLRAVIVPEWAKENLQPSTIPNSTMRVTPDQTKPSVSAKQRDSKLAITVGQLRT
Ga0209239_100000627	F017113	AGGAGG	MSLSPWDEGSDSDHATGLTWDLWLAGHHKIPAWQRAKLPRYRREWAVEVRPFTAEKETTR
Ga0209239_10000066	F079889	GAG	LSQRPSDPNRPYCHYCEESTYHEYDPYFHAWMCQTCFGGMIRVDKKDPLSTIRAELNSLALHVAKSGYNAEVKGKLREVAGQLQKLAEGS

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209239_1000006

Overview

Ecosystem & Geography

Associated Families

Sequences