Scaffold Ga0209468_1000013

Overview

Basic Information

• Taxon OID: 3300026306
• Scaffold ID: Ga0209468_1000013
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_102 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 125014
• Total Scaffold Genes: 121
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 62 (51.24%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: USA: California: Angelo Coastal Reserve
• Coordinates
  • Lat. (^o): 39.7392
  • Long. (^o): -123.6308
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001519	Metagenome / Metatranscriptome	679	Y
F020065	Metagenome	226	Y
F068101	Metagenome / Metatranscriptome	125	Y
F068102	Metagenome	125	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209468_1000013102	F068102	N/A	LLFACGKPGPLTEEKARAIIAESSYKQEPVYAEVPQKVWWTPKAPKDDYDGKALRTLRNLERLGLVTITATETPDSATYIAKVTKKGFPILGTAPSYRGPVYRALIAMKRYDGIRNFVRHPTDPNVGHAELIWHYESPTPYYAIFETKIDKPLNKPFASHVSFWYERHRYRFDVNVKKTQPGS
Ga0209468_1000013118	F068101	AGGAG	MARESSEDHERAAAGLDFEEDPLRSGAANLGAKIAEEGPEALLDEIEELLPESWREHIEAYPLAAIALGVGVGIWLGMKKSQEIIAAGTALVSSVAMSNVSQVMDKVKGGA
Ga0209468_100001360	F001519	N/A	MTLVNSLCAEISVFQGVGEQTGLVVERSAIRGKHGLCKSMRDLAIKSRVLGDGYYYIPIDLWPKQKEPVVVHKHDWTVISSIPRTSRATKKRARK
Ga0209468_10000139	F020065	N/A	MKKKQIQEIKEGRAMRERTYSGRLQPFGPRVKLDSENAVKLTTVPSSAQEKYNGGNKD