NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209688_1029371

Scaffold Ga0209688_1029371


Overview

Basic Information
Taxon OID3300026305 Open in IMG/M
Scaffold IDGa0209688_1029371 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_142 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1061
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000336Metagenome / Metatranscriptome1274Y
F043606Metagenome / Metatranscriptome156N

Sequences

Protein IDFamilyRBSSequence
Ga0209688_10293711F000336N/AMPSAGKTKRKKSSRKRSELDSALDQVTDESVAASMKEFQDLLAQAKGDTSELIRQNAQELEERLVLLKQKKIDKEDFNFFVENQKRDLRVFVDSQPAQSQERAEKLTLHILEIAATKIVPVLIMMI
Ga0209688_10293712F043606N/AVLVDLKGQFDADAAHLRSKASRGKVTPALASEMKKDVNKIYDHALGR

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