Scaffold Ga0209688_1021827

Overview

Basic Information

• Taxon OID: 3300026305
• Scaffold ID: Ga0209688_1021827
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_142 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1238
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: USA: California: Angelo Coastal Reserve
• Coordinates
  • Lat. (^o): 39.7392
  • Long. (^o): -123.6308
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000696	Metagenome / Metatranscriptome	931	Y
F000739	Metagenome / Metatranscriptome	913	Y
F070523	Metagenome / Metatranscriptome	123	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209688_10218271	F000696	GAG	LHSTSLGHSFQQSTNHESRHQRGAISRTTQRTNTCPLLNDSQGNLFTDTILLPYANSAYRKVQRALGNAGGGGFIQDDVLLVVPAVTQTDASLQVSIADATAPPNQLPTDLLMPLKIWERPNSSTDDFLEMVDLTRHGGLPSRAQDVTLSVWEWRADGLYFLGATQDTQIRLRYVKAYPDFTDATSPVLIRNAQEAIAYATAALAAWARGSPLAEKWDDAAADAI
Ga0209688_10218272	F070523	AGGA	VKSDKVSLFPDERVAIHAKLGSILKVGDPAEILLVVILLLALRPVPRRKAPKKGQPNRLP
Ga0209688_10218273	F000739	N/A	CRGNSKARRYTHMTRIEIWLKGLFAAAISGGAGGVLTGFAAVGIDPQHFNLQAGIGATLRIAAAAALINAVIGVAAYLQKSPLPQDSV