Scaffold Ga0209240_1008877

Overview

Basic Information

• Taxon OID: 3300026304
• Scaffold ID: Ga0209240_1008877
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_80cm (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3807
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (60.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: Laytonville, California, USA
• Coordinates
  • Lat. (^o): 39.7392
  • Long. (^o): -123.6308
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022818	Metagenome / Metatranscriptome	212	Y
F073138	Metagenome	120	N
F091807	Metagenome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209240_100887710	F091807	N/A	LRANKSAACRRAIQRILAVVKNNLEDGKYKNDVEAEADFRQLVDRDESCTR
Ga0209240_10088772	F022818	AGG	MLEPLDIFIKMEDGTYVWKAAADSFELAKSTVERLATTSPGEYMIFNQDTGNKIVVKDGLPEPGVAS
Ga0209240_10088779	F073138	N/A	MALPETEYPVCPKHKISMVPHAFDTRDASLLQGTVQGFRCPKLDCSIVYVEGTLKGFYTLEPSGHMTPYLKSGQK