Basic Information | |
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Taxon OID | 3300026304 Open in IMG/M |
Scaffold ID | Ga0209240_1000065 Open in IMG/M |
Source Dataset Name | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_80cm (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 37369 |
Total Scaffold Genes | 35 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 22 (62.86%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (50.00%) |
Associated Families | 4 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria | (Source: IMG/M) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | Laytonville, California, USA | |||||||
Coordinates | Lat. (o) | 39.7392 | Long. (o) | -123.6308 | Alt. (m) | Depth (m) | 0 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F020584 | Metagenome / Metatranscriptome | 223 | Y |
F030232 | Metagenome / Metatranscriptome | 186 | Y |
F093326 | Metagenome | 106 | Y |
F096701 | Metagenome | 104 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0209240_100006515 | F030232 | N/A | MTNREAILRLSVNTGDGLAMTWLRDNNAKVIRAAVTRYFGAGPVADKAEGALVQRMADHARSYEHQENADEWLARCANTECDRLRNEGIHEKANRD |
Ga0209240_100006516 | F020584 | GGA | MEKLQALQAAAREGGFVQVEESEEGTVLWLRKEKSDAATKTHQRICIDSLANILTVYWMTALGKIDSKTFRNVPSLQEWFALQPAE |
Ga0209240_100006519 | F093326 | N/A | MWTYIVGPFLAFLPKEWRKALPFSDAVNWPRAVTLSGLAEMAVALVALLYWYSISMTTWVNRGLEVAMSGKAGSGITDQAIGAMAWFLWANHPLTWLLGYFSVEGAVRMCGAAFADSLLGTLPLFLVDKGVRVFLGGSKTAQEAPGAASSFLGAVSEKILESSVPVSADEISFQKGATEEVMEIRASRKKADWDPPRVVRYRESYYRLEDCSKCAGTRPFRYRLRRLSAGVPGRKVLVYEPVDAVVAGTR |
Ga0209240_10000657 | F096701 | AGG | MPNEITPRQSTLASVLTDIHFWVPVAVLIGGLVLLTFLH |
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