Scaffold Ga0209237_1003442

Overview

Basic Information

• Taxon OID: 3300026297
• Scaffold ID: Ga0209237_1003442
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_1_40cm (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9618
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (60.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Archaea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: Angelo Coastal Reserve, California, USA
• Coordinates
  • Lat. (^o): 39.73825
  • Long. (^o): -123.6301

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009672	Metagenome / Metatranscriptome	314	N
F022852	Metagenome / Metatranscriptome	212	N
F073400	Metagenome	120	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209237_100344210	F009672	GGCGG	VRLLDTTPRWLRLTLGCSSGVLVVTGTGFFFGQLTQFDITPFTLLLHLTLALAVSSWILNFRIRISPDRKPLVAIGVALVVGSIWSSVQQWIGYFQTGVVSDIMLVAGATLMDIAGGCVIYTLFHLNILKK
Ga0209237_10034423	F073400	GAGG	MRSNQLKRFLNSDVVGQLNNGLFFEGHVLNKAGKPSVLERDSQATRQISATRVKWLAKAVRYC
Ga0209237_10034424	F022852	N/A	LTVTIPYSVRISRELLDEMRRLYDRMEPPKPTFSAVLSHIVKLGWDSYKAQKNDEVGLQKVTVAAYPKRIHDQTLQR