Scaffold Ga0209235_1000013

Overview

Basic Information

• Taxon OID: 3300026296
• Scaffold ID: Ga0209235_1000013
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_20cm (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 60883
• Total Scaffold Genes: 64
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 48 (75.00%)
• Novel Protein Genes: 12
• Novel Protein Genes with Ribosome Binding Sites (RBS): 11 (91.67%)
• Associated Families: 12

Taxonomy: All Organisms → cellular organisms → Archaea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: Angelo Coastal Reserve, California, USA
• Coordinates
  • Lat. (^o): 39.718176
  • Long. (^o): -123.652732

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002941	Metagenome / Metatranscriptome	518	Y
F002975	Metagenome / Metatranscriptome	516	Y
F003037	Metagenome / Metatranscriptome	511	Y
F005263	Metagenome / Metatranscriptome	406	Y
F005627	Metagenome / Metatranscriptome	394	Y
F005700	Metagenome / Metatranscriptome	392	N
F007915	Metagenome / Metatranscriptome	342	Y
F023823	Metagenome	208	N
F030030	Metagenome / Metatranscriptome	186	Y
F042845	Metagenome / Metatranscriptome	157	Y
F046962	Metagenome / Metatranscriptome	150	Y
F073400	Metagenome	120	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209235_100001311	F005627	GAG	VVFAMQSPIRRYLPHLLVGLTISLIMVGAYLAVGFASLTAPKALWSVNPVTIAFSGSAGIGSSGSVGEVVKCAPKVENVVFHTAVSNPTKLSLSVSPGGEATCGPAPDPVTVTASCLVAAPNCKGTYTGTVTILEGYTTIPPSLSVTIVVT
Ga0209235_100001316	F073400	GAGG	MRRDQLRRFLNSEVVGQLSNGLFFEGYVVDQAGRALVFDRDGRAPHQISATRVKWLAKAVRYC
Ga0209235_100001317	F023823	GGGGG	LEPAEALVLLSLRYVSGSKCWCLIELGDETKSAFDNALVDSVSAALDALGPTVKESIFLLLQRRNSISPDGIPKLVGEFAKALQDVLGPTARVVEKLIIAGLIARKQVPANIAQGRSLLEVVGSIRLSQISQS
Ga0209235_100001327	F002975	GGAG	LADFCSRCGKTLSLIDPLLELKGLRFCEDCYPDVKREHAAASMSDKMDRRQRVVFADDSSDENLRGSIIKGKQALAVKENEFKWDNPSLSLIASALRILTDQNNIMMKQNELILRELESRPATVKSK
Ga0209235_100001328	F030030	AGGAG	MAKFIMSIGDTAFEILANEAKNRDVTVQQLLRAVVVPDWIRQNADGQLPRENHSNLIQSSIYGGDSRNSRMLVSPVARLRQ
Ga0209235_100001329	F042845	AGGAG	MDTRKWKAFLRMNGETTVDTSQDILTEFKAMVEYLKWIGIDYSMVVQVEGGQTEQSRTLALEQTPRRRGRGQVGD
Ga0209235_100001330	F046962	GGA	MEEIANSGYPPETTSRTVLQDTMTGDQLKNLLAELISSSASLNVRVWLDGVYTDIENAGSHREWMKGREVYFKVEGKVDGQNCLDEAAPRSI
Ga0209235_100001335	F005263	N/A	LERRARRIFTIDHDVSEKIDELAGGHTLEVNVLVNKAIRRYVEWGRYVDTFKLVTSDPRLMKILWSHITIEEAREKGTQNGKDTVVEFILYYFHKFDLDSVLKIFQLIGAEYANAYVYSEFGDKDSRTIILRHSMGRSASAYYGASFKALCDRLGVKVELEESEDQLICKIGPASTLRTIVPKSFKEQLAKQSIERTVGS
Ga0209235_100001338	F005700	GGA	LTYRTEYTLGFLALLPLLATGVAKGTGWLVTVVVVYVGVPLLIWSLLVDRLALLVLRIICQLRESSGHQYYFERQVGKPGVSRRILRDIRVLVFVFFLSALIVPQVTEVTPQNLVIVSNAFIYVAIFLLAIPSSIHVLLWVLEDSGLRCHNTTRLTVTVPAAWTSRWLSSLGGIGAFVSFAVAMGGSLDRAIALGFTLMISLLPSCILAPTLFYRRLEPGIIAKIRQSKAAMTMARLFPQVSGPSLPASSAPTLRSVRVNEDTKQTAQPHS
Ga0209235_100001339	F007915	GAG	MSLAEAAKPALPSSTLRSYAMIGIVLYAFGLVLNEIGNGLAQLWLVPYADTISALGFVIALYTASLAGLGTRLTVLIGLIYGIGIFYVSEPDQTYAVSGLKIGSYTHYVGLGLIGFTMILLIALAFYLTRAKSAHRALPKQDPGSTS
Ga0209235_100001341	F003037	GAG	LWVEFKCPMCGKDLDDDKAMANFLVCGDSSHGLLRFFTGDGCYFTTDERVAEELMKKGKRVHVVDPKEFFGNQTINLE
Ga0209235_100001361	F002941	GAG	LNEAAVPGQMSVKALPMLVPESVLQQNAEKKRVKKGILGGSEERFVFGKTLYLPYLEFTYQYSTEKGFRSKQSVLGQGRSVVMALREVNLGFYPELVSVVPQLVDMEPDLGSMVQGVDSTVLVSERLDELRKTLSDYDYQLQELSKQHDSLTKTDSARQEIKENIDHLKKTRETRWKMFADGLKLPSKIDLEKFEFLEGELFYMPYFLARFSRGGESRFLVWDREGKENDTIAEELMKNSKFRDLVQSHITK