Scaffold Ga0209234_1006323

Overview

Basic Information

• Taxon OID: 3300026295
• Scaffold ID: Ga0209234_1006323
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 08_20_2013_1_20cm (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4491
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: Angelo Coastal Reserve, California, USA
• Coordinates
  • Lat. (^o): 39.718176
  • Long. (^o): -123.652732

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018600	Metagenome / Metatranscriptome	234	Y
F037363	Metagenome / Metatranscriptome	168	N
F093173	Metagenome / Metatranscriptome	106	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209234_10063233	F018600	AGGAGG	MAKRLFTLLGASVLAFTVSMLVQASLAQEKMEKPDKMAKQGRWEGNVIRNDPNKSTLTVRKVGSTDERTVHYDGATRWVSQEHGSKKVNDIDASQVKDGDRVIARGIWDKGVLYATLISKRLSH
Ga0209234_10063235	F093173	GAG	MQVRASPFCGQSQAVKRNDAKGKLAPKLQSSENVIGIISVRKHNQIGEKMRMKINQLLLFVILASLTTPFALGKTKAEVRDITGCLSKGDSAHEFLLTGNDGSTWEVRSSRVALAKHVGHTITATGVVSHARLHNMKEDTKEMAKDTGMKKSDTEHGHMKITAVKMVSDSCQK
Ga0209234_10063237	F037363	N/A	HPDLGKNPARDEASTLGPRSDNRARWLKFADCALHPHGATEEDIAELTDLARDEQETIKSRIERATHVVKRQSKSKH