Scaffold Ga0208277_1016011

Overview

Basic Information

• Taxon OID: 3300026292
• Scaffold ID: Ga0208277_1016011
• Source Dataset Name: Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201406SV205 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3692
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Microbial And Viral Regulation Of Community Carbon Cycling Across Diverse Low-Oxygen Zones

Source Dataset Sampling Location

• Location Name: Pacific Ocean: Eastern Tropical North Pacific
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F048244	Metagenome / Metatranscriptome	148	Y
F090610	Metagenome / Metatranscriptome	108	N
F101084	Metagenome / Metatranscriptome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208277_101601110	F101084	N/A	MTRNDLVYEFNDDMWLMYHDGTIDNSDDFYDQQHQWIDNNVIYTDECKKICDALDYDIFEEHDVFGKAENWSQAAYAAIYDLLHEHNDALTYDEMEKQNENA
Ga0208277_101601113	F048244	N/A	MKVELTQREIDRLYFDLKDYVKTLYYVDRLNELSESDKEECKIELNLIKKFSKL
Ga0208277_10160119	F090610	N/A	MMKWKSKMKMHKVWRLYLINNKSITEISKELNITKNKLKTQYGLK