Scaffold Ga0208277_1000001

Overview

Basic Information

• Taxon OID: 3300026292
• Scaffold ID: Ga0208277_1000001
• Source Dataset Name: Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201406SV205 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 221643
• Total Scaffold Genes: 292
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 217 (74.32%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Associated Families: 7

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales (Source: IMG-VR)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Microbial And Viral Regulation Of Community Carbon Cycling Across Diverse Low-Oxygen Zones

Source Dataset Sampling Location

• Location Name: Pacific Ocean: Eastern Tropical North Pacific
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004144	Metagenome / Metatranscriptome	451	Y
F005433	Metagenome / Metatranscriptome	401	Y
F022758	Metagenome / Metatranscriptome	213	Y
F042029	Metagenome / Metatranscriptome	159	Y
F051480	Metagenome / Metatranscriptome	144	Y
F055215	Metagenome / Metatranscriptome	139	N
F065138	Metagenome / Metatranscriptome	128	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208277_1000001133	F065138	GAGG	VRYAELFELNSEVDSKVIDLLSILSSEGVDNIPLETLVNELKAMGVDADVESLFDEISNLPIVNNIKDGMVYFNTSSLDASNLNKVDPEKADKTVTNMAKKQVKKELNK
Ga0208277_1000001168	F042029	AGGA	MNTLYLVCSHSCLSQMEVPYLLNNSPNLHGTSQAGEHWASYELDGKAIDHEPGILGKIRVHDDYWNIEGGDSQYYNHTVRNTMEITVPQLDGLLNLINNKSIAVLLHAQNYHEIWKWSRNLPVIMIRTAIDEWDGNVVHWAAREYNTLMLDSKNNNNSTDSHAWPGVKEVVDKFQSKKSYNNLIDDCEGDIILKQSQWTTLEGLDTLWKTVGIDAPDQNWINQYYEDFQNHQEIDKTVATELTNEYNRRS
Ga0208277_1000001254	F055215	N/A	MKIKDVLQLPAINIGDEVYVGRFKNRKATVTGFGVDNHNQPILKTNKGEHKLFKPRIAKLMKEE
Ga0208277_100000142	F051480	N/A	MENWCGLGYCKFFRGLIASRQPEEIIKIVERYNKDHDKTESNYIDIVIRSEGSFSYQDIMTMPVNSIKLLVDRMNNRIEELNKQTKQASGRR
Ga0208277_100000167	F022758	AGGAG	MSTLPATGSNISMSTVRNYFGLSGTVSMSTLGSTISPSVTSNIKLSATFGGWQYPSPSGSHP
Ga0208277_100000168	F005433	AGGAG	MIRTRYEIETFVLGAHPSPARKAQVLTEELMKARETKHPDLPILEAIYKDFSAEHNVEELSKDIESTEEEYWVHRLAKLAAIDILTIGKVQPEHMAYMVALPDEAFKASVKEATSIAKQLNYEVQQIEAELQADLASAK
Ga0208277_100000171	F004144	GAG	MIQWLKKSIHHLKVETGWGYFYHLWHSLCNSWALIVIAFKSVVHGLFPWIWKADAPKGVIRMYHQIMRIEHIEKMDKLRKLPKDERYKSNKPIDPIE