Scaffold Ga0209438_1000260

Overview

Basic Information

• Taxon OID: 3300026285
• Scaffold ID: Ga0209438_1000260
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_20cm (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 15406
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (68.18%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: Laytonville, California, USA
• Coordinates
  • Lat. (^o): 39.7392
  • Long. (^o): -123.6308
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005985	Metagenome / Metatranscriptome	384	Y
F012048	Metagenome / Metatranscriptome	284	Y
F086706	Metagenome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209438_100026012	F086706	GGAG	MDFNLYATEKIVAGRLADLRAASAQAALIRTARIGPRGVGPVLGGALIRLGHWLAPDEAGAPSNPGVRVARRA
Ga0209438_100026021	F005985	AGGAGG	LARRSAQPQQSGNTTGSTTRSPRIGRLVRVTLLVVLAAAVSVVGYHALRFVRSCTTLDGAREAIETHVRGRQVRRMARVLKTADREILAARTAVRVTALTCGPSLLGGMTCRARYVVNGQSVGMEAADHYFRVDYALLAGWQATSVAETSGLRYSLTPCRCSWTADGR
Ga0209438_10002608	F012048	N/A	MLGGALTGLRWSHLFFLLSTWAVVSIVALLVVGLAWTLRLKPQAIEDARAQRQDVVRVLARLADAQARDKLDTLGPLAAYFAQRWGSHEPRALQREIDAMRALLHMQTLFVVSPDGRPLAFSPITGPDGGSNLDLRYADRPLLQEAIRVRGPAVSGIIFGRASRDFIVGAAVPIKLDEQIVAFLIGSIRLQASMETLEQAGPGGWLVMIDAGNQAIYLDRKSRQLTQEDWKNHPFVEELSRRRTAGLASLGEEEWLLTRAVMPTLKVDLVLAASVRQILESQRAVLLTLVATLLVSVAMSLAVSTVTAVRFVREQQAVALKMRVGTGG