Scaffold Ga0209350_1000534

Overview

Basic Information

• Taxon OID: 3300026277
• Scaffold ID: Ga0209350_1000534
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_2_20cm (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 20481
• Total Scaffold Genes: 25
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (60.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Archaea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: Angelo Coastal Reserve, California, USA
• Coordinates
  • Lat. (^o): 39.73825
  • Long. (^o): -123.6301

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007745	Metagenome	345	Y
F018154	Metagenome	236	N
F029070	Metagenome / Metatranscriptome	189	N
F029394	Metagenome	188	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209350_100053414	F007745	AGGAGG	MSRSDRLEARDPFLADYKKNLQDVIKGMKKVGPSGLQLLVQEMIRSRWIRDRRASYPYEVAWVFDRREELISGILKKLEEEGNIEPAGLGRGKKGPLKPYKPRTLRLPKQTIKKPSRPPKKASSRIDFSANMLR
Ga0209350_100053416	F018154	N/A	VEAEIAKLRKFQEFLRTDDKLVFQDLLNQCKLYAPYASTMVSTIKEVPLLFSMLFGQHKKIIELEKKILMLETLATKTETTVPVRAIQGPVEKGGG
Ga0209350_100053417	F029070	GAGG	MRMVFRVSWQRAALSVKVKVSNKMKFMQMLDSQTYRILQKEAKNRGASIQELLRTVIIPDWLSEHRKRERP
Ga0209350_10005348	F029394	N/A	VALFLGPTSGPWWSITGATTSKLLRVQVSPFYLQTDASGLSPTTFFSVPLGSFTNLLFILSLIALGASSIHRGTWWNKLAVYFGLCSMTELYLSFLLMYHGALTLLLGAYGVVPPYFGTNHLFANIVGLDLNSHPNPLVTASFSLPFYLGFLSIGLITSSLIVNGIVEKRETRERRGVGAIFTNDS