Scaffold Ga0209350

Basic Information
Taxon OID	3300026277 Open in IMG/M
Scaffold ID	Ga0209350_1000269 Open in IMG/M
Source Dataset Name	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_2_20cm (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Ga0209350_1000269 Open in IMG/M

Source Dataset Name

Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_2_20cm (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	32733
Total Scaffold Genes	35 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	21 (60.00%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (71.43%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

32733

Total Scaffold Genes

35 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

21 (60.00%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (71.43%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Archaea	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Archaea

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location Name	Angelo Coastal Reserve, California, USA
Coordinates	Lat. (^o)	39.73825	Long. (^o)	-123.6301	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Angelo Coastal Reserve, California, USA

Coordinates

Lat. (^o)

39.73825

Long. (^o)

-123.6301

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005627	Metagenome / Metatranscriptome	394	Y
F022852	Metagenome / Metatranscriptome	212	N
F023823	Metagenome	208	N
F030030	Metagenome / Metatranscriptome	186	Y
F042845	Metagenome / Metatranscriptome	157	Y
F061700	Metagenome / Metatranscriptome	131	Y
F088687	Metagenome / Metatranscriptome	109	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209350_100026916	F023823	GAGG	LGDETKNAFDKALVDSVSAALDALGPTVKESIFLLLQRRNSISPGQIPRLVGEFVKALQDVLGPTSRVVEKLIIAGLIARKQIPANIAQGRNLLEVVGSVRLSQVSQS
Ga0209350_100026919	F022852	N/A	MRGLTVTIPYSVRISKELLEEMRRLYDRMEPPKPTFSAVLSHIVKLGWDSYKAQKNGEVGLQKVTVAAYPKRIHDQAFQR
Ga0209350_10002692	F042845	AGGAG	METRKWKAFLRMNGETTVDIGQDILTEFKAMVEYLKWIGIDYSMVVQVEGGQTEQSRTLALEQSPRRRGRGQVGD
Ga0209350_100026923	F005627	AGGAG	MAVGFASLSAPKALWSTNPVTITFSGSTGIGSSGSVGETVKCAPKVDNVVFHTAVSNPTKLSLTVSPGGEATCGPAPDAATVTVTCLVAAPNCKGTYTGTVSILQGYSTIPPSLSVTIVV
Ga0209350_10002693	F030030	AGGAG	MAKFIMSIGDTAFEILANEAKNRDVTVQQLLRAVVVPDWIRQNADGQPPRENHSNLIQSSIYGGDSRNSRLLVSPVARLRR
Ga0209350_10002694	F088687	GGAG	MSDKMDRRQRVVFADDSSDENLRGSIIKGKQALAVKENEFKWDNPSLSLIASALRILTDQNNIMMKQNELILRELESRPATVKSK
Ga0209350_10002698	F061700	N/A	MCEKCHRFFIISYEKNEKGEVVEIGHELDIRVKSSGIVRVDEGEQQRGFERIPPTRKYEEQTCW

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209350_1000269

Overview

Ecosystem & Geography

Associated Families

Sequences