Scaffold Ga0209350_1000001

Overview

Basic Information

• Taxon OID: 3300026277
• Scaffold ID: Ga0209350_1000001
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_2_20cm (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 185986
• Total Scaffold Genes: 157
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 127 (80.89%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Associated Families: 8

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: Angelo Coastal Reserve, California, USA
• Coordinates
  • Lat. (^o): 39.73825
  • Long. (^o): -123.6301

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001811	Metagenome / Metatranscriptome	631	Y
F002591	Metagenome / Metatranscriptome	545	Y
F003718	Metagenome / Metatranscriptome	472	Y
F005190	Metagenome	409	Y
F025474	Metagenome / Metatranscriptome	201	Y
F033939	Metagenome / Metatranscriptome	176	Y
F046939	Metagenome / Metatranscriptome	150	Y
F095897	Metagenome / Metatranscriptome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209350_10000011	F025474	AGGAGG	VATTGAARAKQDALPRSATITIRDQAPYPSGKVEVEPWIGRIHFVNKDKKDYRLRFWKSNTEPIAGIDILLPARARVTVMIKRGDEFHFGVFHTKGDEAALGKGGGPIVN
Ga0209350_1000001101	F001811	AGG	MHGFSSSVLSCLERKRLEEDLSEARIRGRNLSRLRQLTRRERMALDEREQTAQAQLRDHDAEHGCQR
Ga0209350_1000001149	F046939	N/A	MTDKWGRRLFKAGAVALLILGLVHSLSLIREQVPANETEKQLLGLMSGYRFNLMGSMRSMDDLVRGFSVSFMLGALGFGFFDLLLWGERPVLLKRAALANIIWLAAMTAVSLRYFFIIPILFLAVTLLIFVLAWLKLPAEGTT
Ga0209350_100000117	F002591	GGAGG	MKLRICTTLFSLTVAQLAWGQTNGKLVNTEGNAPEPSANSYTVIGATPKQEALVRAQIQVMQPDVYPLRVLFVPHWKYMETARIFRLHVPAGYTSAMFTHLPSRSVFIDSDRYVSDDSLGYWVAHELGHLAANSTRESDADKAAGEYRKRLRDARKPDAH
Ga0209350_100000123	F033939	GGAG	MRRRLIHIALILLLVPPLLAAVAGWLSAPAFLHPIRRELTPDLVREADASFATTGSRRQRRPYRHLRLARTH
Ga0209350_100000126	F095897	GAGG	LVINLDRKPKRLPCLVLDSSKEGFRLRGSFNLRRGQSVELILDEETVSPEWCRVAWVGKAGSKQESEIGLQTV
Ga0209350_100000165	F003718	GAG	MSVALCAFVFVSGAQAQSDTGAVEFVARITPTAARPEPVRQFTFFILTKSYVDIVKEVEEKDPAPQRDQFIDGLKVSPELRTWLKDHDTLDLTQLDLDKLLTPDDILNTPEFLLAYQRTNSGGVTMGFPQPKFSEVDQTEHPEKYKKLREDYFTALRKFIRKRPETISGVEMELDAVNPQKKWQVLQNDRRKRIQRVAPDLAQIKFLAAKADTDLEGRAAVSGLAPGDYWVSTLNLDADAGDMRVRWDVPVRIERGKTVRIELSNLNSIDAHGSTP
Ga0209350_100000195	F005190	GGAGG	MSENMHQRALQLIAQARVEGMPETDRNWLRAHLEECDFCAKHARQTDRALRLLRTAPISLPAGLASRTQFRVRLRAQELREREPKRRALWLACGLSWIFGVASAPYVWSLFQWLGQRTGVPKLVWEVGFGLWWSIPALFAVAVLLMEASRRGEQADWINQGS