Metagenome / Metatranscriptome Family F095897

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F095897
Family Type	Metagenome / Metatranscriptome
Number of Sequences	105
Average Sequence Length	62 residues
Representative Sequence	PCLVLDSSKEGFRLRGSFHLRRGQVVELILEEYSPSSERCSVVWVGKAGSKQEGELGLEIV
Number of Associated Samples	87
Number of Associated Scaffolds	105

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	5.88 %
% of genes near scaffold ends (potentially truncated)	92.38 %
% of genes from short scaffolds (< 2000 bps)	88.57 %
Associated GOLD sequencing projects	79
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.62

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (96.190 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (37.143 % of family members)
Environment Ontology (ENVO)	Unclassified (33.333 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (40.000 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 0.00% β-sheet: 32.58% Coil/Unstructured: 67.42%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.62
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.62
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 105 Family Scaffolds
PF07238	PilZ	12.38
PF12844	HTH_19	2.86
PF00989	PAS	1.90
PF01037	AsnC_trans_reg	1.90
PF04972	BON	1.90
PF01381	HTH_3	1.90
PF12833	HTH_18	0.95
PF03793	PASTA	0.95
PF07366	SnoaL	0.95
PF07927	HicA_toxin	0.95
PF01207	Dus	0.95
PF07690	MFS_1	0.95
PF01103	Omp85	0.95
PF13683	rve_3	0.95
PF03745	DUF309	0.95
PF07589	PEP-CTERM	0.95
PF12849	PBP_like_2	0.95
PF14559	TPR_19	0.95
PF01740	STAS	0.95
PF02371	Transposase_20	0.95
PF00848	Ring_hydroxyl_A	0.95
PF13518	HTH_28	0.95
PF13174	TPR_6	0.95
PF08281	Sigma70_r4_2	0.95
PF16697	Yop-YscD_cpl	0.95

COG ID	Name	Functional Category	% Frequency in 105 Family Scaffolds
COG4638	Phenylpropionate dioxygenase or related ring-hydroxylating dioxygenase, large terminal subunit	Inorganic ion transport and metabolism [P]	1.90
COG0042	tRNA-dihydrouridine synthase	Translation, ribosomal structure and biogenesis [J]	0.95
COG1547	Predicted metal-dependent hydrolase	Function unknown [S]	0.95
COG1724	Predicted RNA binding protein YcfA, dsRBD-like fold, HicA-like mRNA interferase family	General function prediction only [R]	0.95
COG3547	Transposase	Mobilome: prophages, transposons [X]	0.95

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	96.19 %
Unclassified	root	N/A	3.81 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	96.19 %
Unclassified	root	N/A	3.81 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	96.19 %
Unclassified	root	N/A	3.81 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	77.14 %
Unclassified	root	N/A	3.81 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.95 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	0.95 %

Name	Rank	Taxonomy	Distribution
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	31.43 %
Unclassified	root	N/A	3.81 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.95 %
Planctomycetes	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	0.95 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	31.43 %
Unclassified	root	N/A	3.81 %
Phycisphaerae	class	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae	0.95 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.95 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	31.43 %
Unclassified	root	N/A	3.81 %
unclassified Phycisphaerae	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae	0.95 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.95 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	31.43 %
Unclassified	root	N/A	3.81 %
Phycisphaerae bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium	0.95 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.95 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2070309004\|prs_FHA1B5K04YE3K9	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	542	Open in IMG/M
3300000567\|JGI12270J11330_10281953	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	523	Open in IMG/M
3300002907\|JGI25613J43889_10033834	All Organisms → cellular organisms → Bacteria → Acidobacteria	1448	Open in IMG/M
3300004080\|Ga0062385_10239208	All Organisms → cellular organisms → Bacteria → Acidobacteria	1005	Open in IMG/M
3300004082\|Ga0062384_101027449	Not Available	591	Open in IMG/M
3300004091\|Ga0062387_101099371	All Organisms → cellular organisms → Bacteria → Acidobacteria	616	Open in IMG/M
3300004473\|Ga0068919_1127707	All Organisms → cellular organisms → Bacteria → Acidobacteria	540	Open in IMG/M
3300005177\|Ga0066690_10397817	All Organisms → cellular organisms → Bacteria → Acidobacteria	935	Open in IMG/M
3300005186\|Ga0066676_10057824	All Organisms → cellular organisms → Bacteria → Acidobacteria	2231	Open in IMG/M
3300005542\|Ga0070732_10362918	All Organisms → cellular organisms → Bacteria	872	Open in IMG/M
3300006174\|Ga0075014_100482594	All Organisms → cellular organisms → Bacteria → Acidobacteria	691	Open in IMG/M
3300007258\|Ga0099793_10028418	All Organisms → cellular organisms → Bacteria → Acidobacteria	2355	Open in IMG/M
3300007258\|Ga0099793_10032138	All Organisms → cellular organisms → Bacteria → Acidobacteria	2237	Open in IMG/M
3300007258\|Ga0099793_10596557	All Organisms → cellular organisms → Bacteria	553	Open in IMG/M
3300009012\|Ga0066710_101954392	All Organisms → cellular organisms → Bacteria	874	Open in IMG/M
3300009090\|Ga0099827_11387207	All Organisms → cellular organisms → Bacteria → Acidobacteria	612	Open in IMG/M
3300009518\|Ga0116128_1056881	All Organisms → cellular organisms → Bacteria → Acidobacteria	1220	Open in IMG/M
3300009549\|Ga0116137_1059299	All Organisms → cellular organisms → Bacteria → Acidobacteria	1213	Open in IMG/M
3300009549\|Ga0116137_1181176	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	570	Open in IMG/M
3300009615\|Ga0116103_1135496	All Organisms → cellular organisms → Bacteria → Acidobacteria	604	Open in IMG/M
3300009646\|Ga0116132_1058092	All Organisms → cellular organisms → Bacteria → Acidobacteria	1229	Open in IMG/M
3300009646\|Ga0116132_1288698	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	501	Open in IMG/M
3300010358\|Ga0126370_10012303	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	4636	Open in IMG/M
3300010398\|Ga0126383_10995719	All Organisms → cellular organisms → Bacteria	926	Open in IMG/M
3300011269\|Ga0137392_11343606	All Organisms → cellular organisms → Bacteria → Acidobacteria	574	Open in IMG/M
3300011271\|Ga0137393_11361708	All Organisms → cellular organisms → Bacteria → Acidobacteria	599	Open in IMG/M
3300012096\|Ga0137389_10789859	All Organisms → cellular organisms → Bacteria → Acidobacteria	815	Open in IMG/M
3300012189\|Ga0137388_10649102	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	981	Open in IMG/M
3300012201\|Ga0137365_11123558	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	565	Open in IMG/M
3300012202\|Ga0137363_10073718	All Organisms → cellular organisms → Bacteria	2521	Open in IMG/M
3300012202\|Ga0137363_10224380	All Organisms → cellular organisms → Bacteria → Acidobacteria	1518	Open in IMG/M
3300012203\|Ga0137399_11141318	All Organisms → cellular organisms → Bacteria → Acidobacteria	656	Open in IMG/M
3300012205\|Ga0137362_10273917	All Organisms → cellular organisms → Bacteria	1459	Open in IMG/M
3300012205\|Ga0137362_11195550	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	645	Open in IMG/M
3300012205\|Ga0137362_11471358	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	568	Open in IMG/M
3300012349\|Ga0137387_11267756	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	517	Open in IMG/M
3300012351\|Ga0137386_10488118	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	887	Open in IMG/M
3300012393\|Ga0134052_1209957	All Organisms → cellular organisms → Bacteria → Acidobacteria	500	Open in IMG/M
3300012685\|Ga0137397_10216944	All Organisms → cellular organisms → Bacteria → Acidobacteria	1424	Open in IMG/M
3300012917\|Ga0137395_10032963	All Organisms → cellular organisms → Bacteria → Acidobacteria	3139	Open in IMG/M
3300012918\|Ga0137396_10958727	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	623	Open in IMG/M
3300012918\|Ga0137396_10976021	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	615	Open in IMG/M
3300012922\|Ga0137394_10760343	All Organisms → cellular organisms → Bacteria → Acidobacteria	814	Open in IMG/M
3300012925\|Ga0137419_10818087	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	763	Open in IMG/M
3300012925\|Ga0137419_10902136	All Organisms → cellular organisms → Bacteria → Acidobacteria	728	Open in IMG/M
3300012925\|Ga0137419_11805160	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	523	Open in IMG/M
3300012927\|Ga0137416_11268734	All Organisms → cellular organisms → Bacteria	665	Open in IMG/M
3300012927\|Ga0137416_11859041	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	551	Open in IMG/M
3300012930\|Ga0137407_11008734	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	788	Open in IMG/M
3300012960\|Ga0164301_10226930	All Organisms → cellular organisms → Bacteria	1210	Open in IMG/M
3300012976\|Ga0134076_10591160	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	517	Open in IMG/M
3300014152\|Ga0181533_1133037	All Organisms → cellular organisms → Bacteria → Acidobacteria	1044	Open in IMG/M
3300014153\|Ga0181527_1092335	All Organisms → cellular organisms → Bacteria → Acidobacteria	1447	Open in IMG/M
3300014155\|Ga0181524_10108229	All Organisms → cellular organisms → Bacteria → Acidobacteria	1532	Open in IMG/M
3300015053\|Ga0137405_1273505	All Organisms → cellular organisms → Bacteria	1924	Open in IMG/M
3300015241\|Ga0137418_10003080	All Organisms → cellular organisms → Bacteria	15316	Open in IMG/M
3300015245\|Ga0137409_11601132	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	503	Open in IMG/M
3300017823\|Ga0187818_10290299	All Organisms → cellular organisms → Bacteria → Acidobacteria	717	Open in IMG/M
3300017924\|Ga0187820_1042198	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1214	Open in IMG/M
3300017938\|Ga0187854_10494721	All Organisms → cellular organisms → Bacteria → Acidobacteria	507	Open in IMG/M
3300017955\|Ga0187817_10250130	All Organisms → cellular organisms → Bacteria → Acidobacteria	1129	Open in IMG/M
3300017955\|Ga0187817_10839061	All Organisms → cellular organisms → Bacteria	587	Open in IMG/M
3300018030\|Ga0187869_10556773	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	544	Open in IMG/M
3300020170\|Ga0179594_10036757	All Organisms → cellular organisms → Bacteria	1595	Open in IMG/M
3300020170\|Ga0179594_10250250	All Organisms → cellular organisms → Bacteria → Acidobacteria	668	Open in IMG/M
3300020170\|Ga0179594_10272472	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	639	Open in IMG/M
3300020199\|Ga0179592_10271681	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	757	Open in IMG/M
3300020579\|Ga0210407_10978629	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	646	Open in IMG/M
3300021170\|Ga0210400_10167771	All Organisms → cellular organisms → Bacteria → Acidobacteria	1774	Open in IMG/M
3300021407\|Ga0210383_11498713	All Organisms → cellular organisms → Bacteria	558	Open in IMG/M
3300022726\|Ga0242654_10086228	All Organisms → cellular organisms → Bacteria → Acidobacteria	962	Open in IMG/M
3300024222\|Ga0247691_1056293	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	593	Open in IMG/M
3300024224\|Ga0247673_1039501	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	659	Open in IMG/M
3300025441\|Ga0208456_1094585	All Organisms → cellular organisms → Bacteria → Acidobacteria	512	Open in IMG/M
3300025448\|Ga0208037_1034699	All Organisms → cellular organisms → Bacteria → Acidobacteria	1056	Open in IMG/M
3300025480\|Ga0208688_1033877	All Organisms → cellular organisms → Bacteria → Acidobacteria	1197	Open in IMG/M
3300025501\|Ga0208563_1032679	All Organisms → cellular organisms → Bacteria → Acidobacteria	1234	Open in IMG/M
3300025898\|Ga0207692_10174309	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1249	Open in IMG/M
3300025915\|Ga0207693_11397269	All Organisms → cellular organisms → Bacteria → Acidobacteria	520	Open in IMG/M
3300026277\|Ga0209350_1000001	All Organisms → cellular organisms → Bacteria	185986	Open in IMG/M
3300026297\|Ga0209237_1279483	All Organisms → cellular organisms → Bacteria → Acidobacteria	512	Open in IMG/M
3300026319\|Ga0209647_1243654	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	602	Open in IMG/M
3300026325\|Ga0209152_10348825	All Organisms → cellular organisms → Bacteria → Acidobacteria	566	Open in IMG/M
3300026328\|Ga0209802_1269153	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	573	Open in IMG/M
3300026335\|Ga0209804_1201531	All Organisms → cellular organisms → Bacteria → Acidobacteria	829	Open in IMG/M
3300026515\|Ga0257158_1130184	All Organisms → cellular organisms → Bacteria → Acidobacteria	508	Open in IMG/M
3300026529\|Ga0209806_1204654	All Organisms → cellular organisms → Bacteria → Acidobacteria	685	Open in IMG/M
3300026557\|Ga0179587_10900853	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	583	Open in IMG/M
3300027643\|Ga0209076_1226071	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	508	Open in IMG/M
3300027729\|Ga0209248_10163285	All Organisms → cellular organisms → Bacteria	663	Open in IMG/M
3300027765\|Ga0209073_10359528	All Organisms → cellular organisms → Bacteria	589	Open in IMG/M
3300027795\|Ga0209139_10241285	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium	638	Open in IMG/M
3300027903\|Ga0209488_10210941	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1462	Open in IMG/M
3300028536\|Ga0137415_11181802	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	579	Open in IMG/M
3300031057\|Ga0170834_104577482	All Organisms → cellular organisms → Bacteria	677	Open in IMG/M
3300031754\|Ga0307475_10352355	All Organisms → cellular organisms → Bacteria → Acidobacteria	1183	Open in IMG/M
3300031820\|Ga0307473_10629169	All Organisms → cellular organisms → Bacteria → Acidobacteria	745	Open in IMG/M
3300031890\|Ga0306925_11265819	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	735	Open in IMG/M
3300031962\|Ga0307479_10855001	All Organisms → cellular organisms → Bacteria → Acidobacteria	883	Open in IMG/M
3300031962\|Ga0307479_11135977	All Organisms → cellular organisms → Bacteria → Acidobacteria	746	Open in IMG/M
3300031962\|Ga0307479_11835765	All Organisms → cellular organisms → Bacteria → Acidobacteria	557	Open in IMG/M
3300032205\|Ga0307472_100023032	All Organisms → cellular organisms → Bacteria	3457	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	75.24%
Aquatic	Environmental → Aquatic	24.76%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	75.24%
Freshwater	Environmental → Aquatic → Freshwater	23.81%
Sediment	Environmental → Aquatic → Sediment	0.95%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	72.38%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	23.81%
Loam	Environmental → Terrestrial → Soil → Loam	2.86%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.95%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	44.76%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	15.24%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	10.48%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	9.52%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	9.52%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	4.76%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	2.86%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.95%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.95%
Tropical Rainforest	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest	0.95%

Habitat	Taxonomy	Distribution
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	37.14%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	9.52%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	6.67%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	6.67%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	5.71%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	4.76%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	4.76%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	4.76%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	2.86%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	2.86%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	1.90%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	1.90%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	1.90%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	1.90%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	0.95%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.95%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	0.95%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.95%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.95%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.95%
Green-Waste Compost	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest → Green-Waste Compost	0.95%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2070309004	Green-waste compost microbial communities at University of California, Davis, USA, from solid state bioreactor - Luquillo Rain Forest, Puerto Rico	Environmental	Open in IMG/M
3300000567	Peat soil microbial communities from Weissenstadt, Germany - SII-2010	Environmental	Open in IMG/M
3300002907	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_40cm	Environmental	Open in IMG/M
3300004080	Coassembly of ECP04_OM1, ECP04_OM2, ECP04_OM3	Environmental	Open in IMG/M
3300004082	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3	Environmental	Open in IMG/M
3300004091	Coassembly of ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300004473	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 4 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300005177	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_139	Environmental	Open in IMG/M
3300005186	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_125	Environmental	Open in IMG/M
3300005542	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen04_05102014_R1	Environmental	Open in IMG/M
3300006174	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2014	Environmental	Open in IMG/M
3300007258	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3	Environmental	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009090	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG	Environmental	Open in IMG/M
3300009518	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_16_150	Environmental	Open in IMG/M
3300009549	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_20_100	Environmental	Open in IMG/M
3300009615	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_4_100	Environmental	Open in IMG/M
3300009646	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_17_150	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300011269	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4A metaG	Environmental	Open in IMG/M
3300011271	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4B metaG	Environmental	Open in IMG/M
3300012096	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaG	Environmental	Open in IMG/M
3300012189	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaG	Environmental	Open in IMG/M
3300012201	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_40_16 metaG	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012203	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012349	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Sage2_R_115_16 metaG	Environmental	Open in IMG/M
3300012351	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_100_16 metaG	Environmental	Open in IMG/M
3300012393	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_40cm_5_0_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012685	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaG	Environmental	Open in IMG/M
3300012917	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk2.16 metaG	Environmental	Open in IMG/M
3300012918	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czcobulk3.16 metaG	Environmental	Open in IMG/M
3300012922	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk1.16 metaG	Environmental	Open in IMG/M
3300012925	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012927	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012930	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012960	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MG	Environmental	Open in IMG/M
3300012976	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_40cm_5_0_1 metaG	Environmental	Open in IMG/M
3300014152	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin11_60_metaG	Environmental	Open in IMG/M
3300014153	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin06_60_metaG	Environmental	Open in IMG/M
3300014155	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_60_metaG	Environmental	Open in IMG/M
3300015053	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300015241	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015245	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300017823	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_3	Environmental	Open in IMG/M
3300017924	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_5	Environmental	Open in IMG/M
3300017938	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_6_150	Environmental	Open in IMG/M
3300017955	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_2	Environmental	Open in IMG/M
3300018006	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_4	Environmental	Open in IMG/M
3300018030	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_13_100	Environmental	Open in IMG/M
3300020170	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad1_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300020199	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300021170	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-M	Environmental	Open in IMG/M
3300021407	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-O	Environmental	Open in IMG/M
3300022726	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-30-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300024222	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK32	Environmental	Open in IMG/M
3300024224	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK14	Environmental	Open in IMG/M
3300025441	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_4_100 (SPAdes)	Environmental	Open in IMG/M
3300025448	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_13_100 (SPAdes)	Environmental	Open in IMG/M
3300025480	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_6_150 (SPAdes)	Environmental	Open in IMG/M
3300025501	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_17_150 (SPAdes)	Environmental	Open in IMG/M
3300025898	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025915	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300026277	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_2_20cm (SPAdes)	Environmental	Open in IMG/M
3300026297	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_1_40cm (SPAdes)	Environmental	Open in IMG/M
3300026319	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_60cm (SPAdes)	Environmental	Open in IMG/M
3300026325	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_107 (SPAdes)	Environmental	Open in IMG/M
3300026328	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_129 (SPAdes)	Environmental	Open in IMG/M
3300026335	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_139 (SPAdes)	Environmental	Open in IMG/M
3300026515	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NL-03-A	Environmental	Open in IMG/M
3300026529	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_152 (SPAdes)	Environmental	Open in IMG/M
3300026557	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal	Environmental	Open in IMG/M
3300027643	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3 (SPAdes)	Environmental	Open in IMG/M
3300027729	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP04_OM1 (SPAdes)	Environmental	Open in IMG/M
3300027765	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100 (SPAdes)	Environmental	Open in IMG/M
3300027795	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP14_OM3 (SPAdes)	Environmental	Open in IMG/M
3300027903	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2 (SPAdes)	Environmental	Open in IMG/M
3300028536	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300031057	Oak Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031754	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515	Environmental	Open in IMG/M
3300031820	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_515	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031962	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
prs_00202570	2070309004	Green-Waste Compost	LGRHEERFPCLILDSTQEGFRVRGTFRLRRGQAVEVILDEDPLNAVQCSVIWVGRLGSKLEGEAGLETV
JGI12270J11330_102819531	3300000567	Peatlands Soil	LVVNLNRDQKRLPCLILDSSKEGFRLRGTFHLRRGQVVELIPDETSPSSERCSVVWVGEAGSKQEGELGLEIV*
JGI25613J43889_100338341	3300002907	Grasslands Soil	CLVIDSSKEGFRLRGSFDLRRGQVVELILEEDMPTPERCKVVWVGKAGSKREGELGLETL
Ga0062385_102392082	3300004080	Bog Forest Soil	VLDSSKEGFRLRGNLNLRRGELIELIFDEDRAIAERCNVVWVGRAGSKHEGEAGLEAVRTDQPVAAASL*
Ga0062384_1010274491	3300004082	Bog Forest Soil	EGFRLRGRFDLRRGQIVEVSLDDEMPTPQRCSVVWVGKVGSKQEGEVGLEFV*
Ga0062387_1010993712	3300004091	Bog Forest Soil	DFSKHGYRLRGSFRLRRGQVVELILDETPSSSEHCSVVWTGKAGSKLEGEAGLQCV*
Ga0068919_11277071	3300004473	Peatlands Soil	SSKRGFRLRGTFDLRRGQVVELTIDEEMPSPERCTVVWVGKAGSKQEGEIGLETI*
Ga0066690_103978171	3300005177	Soil	KRLPCLVVDSSKGGFRLRGSFDLKRGQVVELILEEDMPSPERCMVVWVGKVGSKQQGEVGLETGRRSGSR*
Ga0066676_100578241	3300005186	Soil	QKRFPCLVLDFSKEGFRLRGSFHIRRGQVVELILDEYPPICERCSVVWVGKANSKHEGEVGLETVEAIRQSINTGSL*
Ga0070732_103629181	3300005542	Surface Soil	CLVLDSSQEGFRLRGSFHLRRGQVVEIVLDQEPLNGTRCSVVWIGKAGSRHEGEAGLETISGRRA*
Ga0075014_1004825942	3300006174	Watersheds	MELEFNLKRFPCLVLDSSNEGFRLRGSFRLRRGQLVELILDENPSASHRCRVVWVGNAGSKQEGQ
Ga0099793_100284184	3300007258	Vadose Zone Soil	VVDSSKEGFRLRGSFDLRRGQVVELILEEDMPTPERCKVVWVGKAGSKREGEFGLETL*
Ga0099793_100321382	3300007258	Vadose Zone Soil	EGFRLRGSFDLRRGQVVELILDEEMPSPERCSVVWVGKAGSKQEGEVGLKTI*
Ga0099793_105965571	3300007258	Vadose Zone Soil	LVLDSSKDGFRVRGSFHLRRGQIVEVILGEDPLNAVRCDVVWIGKSGSRREGEVGLETV*
Ga0066710_1019543922	3300009012	Grasslands Soil	MPKRLPCLILDSSKDGFRLRESFDLRRGQVVELIFDEDTPSPERCSVVWVGKAGSKQEGQVGLEIV
Ga0099827_113872071	3300009090	Vadose Zone Soil	EGFRLRGNFDLRCGEVVELILDEETPSSERCSVVWVGKAGSKQEGEVGLQTI*
Ga0116128_10568811	3300009518	Peatland	LVLDSSKEGFRLRGSFHLRRGQVVELILEEYSPSSERCSVVWVGKAGSKQEGELGLEIV*
Ga0116137_10592991	3300009549	Peatland	PCLVLDSSKEGFRLRGSFHLRRGQVVELILEEYSPSSERCSVVWVGKAGSKQEGELGLEIV*
Ga0116137_11811761	3300009549	Peatland	SLIINLDRNQKRLPCLVLDSSKEGFRLRGSFHLRRGQVVELILEEYSPSAERCSVVWVGKAGSKQEGELGLEIV*
Ga0116103_11354961	3300009615	Peatland	RLRGSFHLRRGQVVELILEEYSPSAERCSVVWVGKAGSKQEGELGLEIV*
Ga0116132_10580921	3300009646	Peatland	LPCLVLDSSKEGFRLRGSFHLRRGQVVELILEEYSPSSERCSVVWVGKAGSKQEGELGLEIV*
Ga0116132_12886981	3300009646	Peatland	RNQKRLPCLVLDSSKEGFRLRGSFHLRRGQVVELILDENSPSAERCSVVWVGKAGSKQEGELGLEIV*
Ga0126370_100123031	3300010358	Tropical Forest Soil	VLDSSKEGFRLRGSLELRRGQVVELILDEETPSPERCSVVWVGKAGSKQEGEAGLEVL*
Ga0126383_109957192	3300010398	Tropical Forest Soil	VLDSSKEGFRLRGSFELRRGQVVELILDEETPNPERCSVVWVGKAGSKQEGEVGLEAL*
Ga0137392_113436061	3300011269	Vadose Zone Soil	KRFPCLILDSSKEGFRLRGSFHLRRGQVIELILDENPPIFERCSVVWVGKAGSKQEGEVGLETR*
Ga0137393_113617081	3300011271	Vadose Zone Soil	GFRVRGSFDLRRGQVVELILNEDTPNPERCRVVWVGKAGTKYEGEVGLETV*
Ga0137389_107898592	3300012096	Vadose Zone Soil	SKEGYRVRGSFDLRRGQVVELILDEDTPNPERCRVVWVGKAGSKQEGEVGLETV*
Ga0137388_106491022	3300012189	Vadose Zone Soil	ASIVINLDRKPKRLPCLVLDSSKEGFRLRGSFDLRRGQVVELILDEETPTPERCSVVWVGRAASKQEGEAGLEIV*
Ga0137365_111235582	3300012201	Vadose Zone Soil	KRLPCLVLDSSKEGFRLRGSFDLRRGQVVELIVDEETPSSERCSVVWVGKASSKQEGEVGLETVR*
Ga0137363_100737181	3300012202	Vadose Zone Soil	PCLVLDSSKEGFRVRGSFDLRRGQVVELILDEDLPNPERCRVVWVGKAGSKQEGEVGLETV*
Ga0137363_102243801	3300012202	Vadose Zone Soil	LRGSFDLRRGQVVELILGGDMPTPERCKVVWVGKTGSKREGELGLETL*
Ga0137399_111413181	3300012203	Vadose Zone Soil	ACLVVDSSKEGFRVRGSFDLRRGQVVELILDEDMPSPERCRVVWVGKSGSKQEGQVGLQLLNPTVNPRGA*
Ga0137362_102739171	3300012205	Vadose Zone Soil	NPERLPCLVLDSSKDGFRVRGSFHLRRGQIVEVILGEDPLNAVRCDVVWIGKSGSRREGEVGLETV*
Ga0137362_111955501	3300012205	Vadose Zone Soil	CLVLDSSKEGFRLRGSFDLRRGQVVELILDEETPSPERCSVVWVGRAASKQEGEAGLEIV
Ga0137362_114713582	3300012205	Vadose Zone Soil	LVVESSKDGFRVRGSFHLRRGQMIEIVFDQDPLNAVRCNVVWIGKGNSKQEGEVGLQTV*
Ga0137387_112677561	3300012349	Vadose Zone Soil	KRFPCLVFDSSKEGFRLRGSFNVWRGQVVQLILDENSPKRCKVVWVGKADSKQEGEIGLEAV*
Ga0137386_104881181	3300012351	Vadose Zone Soil	KEGFRLRGSFNVWRGQVVQLILDENSPKRCKVVWVGKADSKQEGEIGLEAV*
Ga0134052_12099572	3300012393	Grasslands Soil	VVSRKRASLVINLDRRPKRLPCLVLDSSKEGFRLRGSFDLRRGQVVELILDGEMPSPERVVWVGKAGSKQEGEV
Ga0137397_102169443	3300012685	Vadose Zone Soil	LVINLEGKQKRIPCLVLNSSKGGFRVRGSLHLKRGQVVELVLDEYAPISERCSVVWVGGPGSKQEGEVGLEIV*
Ga0137395_100329636	3300012917	Vadose Zone Soil	ASLIINLDGYPKRLPCRAVDSSKEGFRLRGSFNVWRGQVVQLILDENSPKRCKVVWVGKADSKQEGEIGLEAV*
Ga0137396_109587271	3300012918	Vadose Zone Soil	LPCLVLDSSKEGFRLRGSFDLRRGQMVELILDEEMPSPERCSVVWVGKAGSKQENEIGLQTV*
Ga0137396_109760211	3300012918	Vadose Zone Soil	EGFRVRGSFDLRRGQVLELILDEDMLNPERCRVVWVGKAGSKQEGEVGLETV*
Ga0137394_107603432	3300012922	Vadose Zone Soil	PCLVLDSSKEGFRVRGSFDLRRGQVVELILDEDLSNPERCRVVWVGKAGSKQEGEVGLETV*
Ga0137419_108180871	3300012925	Vadose Zone Soil	KMFPCLIVDRSQEGFRLRGSFKLRRGQIVEVISDADPLNSVRCSVVWIGKAGSKQEGEVGLETTV*
Ga0137419_109021361	3300012925	Vadose Zone Soil	EGFRLRGSFDLRRGQVVELILDEEMPSPERCSVVWVGKAGSKQEGEVGLETV*
Ga0137419_118051601	3300012925	Vadose Zone Soil	ELKRQPCLVLDYSNDGFRVRGAFQLRRGPVVEVILDEDPLNAVRCSVVWVGKAGSKQEGEVGLETV*
Ga0137416_112687341	3300012927	Vadose Zone Soil	KPKRLPCLVLDSSKEGFRLRGSFDLRRGQVVELILDEDMPSPERCSVVWVGKAGSKQEGEVGLEAV*
Ga0137416_118590412	3300012927	Vadose Zone Soil	LESHQKRLPCLVLDSSKEGFRLRGSFHVRRGQVVELILSEDPPSFVRCSVVWVGKAGSKREGEVGLETV*
Ga0137407_110087342	3300012930	Vadose Zone Soil	FRLRGSFELRRGQVVEIILDEETPSAERCSVVWVGRAGSNEEGEIGLEAI*
Ga0164301_102269303	3300012960	Soil	SSKEGFRLRGSLHVRRGQVVALILDEDAPNSERCSVVWVGKPGSKQEGEVGLEIV*
Ga0134076_105911601	3300012976	Grasslands Soil	VVNLDRKPKRHPCLVLDSSKEGFRLRGSFDLRRGQVVELIFDEDTPSSERCSVVWVGKACSKQEGQVGLEIV*
Ga0181533_11330372	3300014152	Bog	GFRLRGSFHLKRGQVVELILEENSPSSERCSVVWVGKAGSKQEGELGLEIIQAIANVR*
Ga0181527_10923353	3300014153	Bog	RGSFHLKRGQVVELILEENSPSSERCSVVWVGKAGSKQEGELGLEIIQAIANVR*
Ga0181524_101082293	3300014155	Bog	SKEGFRLRGSFHLKRGQVVELILEENSPSSERCSVVWVGKAGSKQEGELGLEIIQAIANVR*
Ga0137405_12735054	3300015053	Vadose Zone Soil	RLPCLVLDSSKEGFRLRGSFDLRRGQMVELILDEEMPSPERCSVVWVGKAGSKQENEIGLQTV*
Ga0137418_1000308015	3300015241	Vadose Zone Soil	KPKRLPCLVLDSSKEGFRLRGSFDLRRGQVVELILDEDMPSPERCSVVWVAKAGSKQEGEVGLEAV*
Ga0137409_116011321	3300015245	Vadose Zone Soil	VINLDRDQKRLPCLVVDSSKEGFRLRGSFHLRRGQAVEIVLDEDPFSSVRCSVVWVGKAGSKQEGEAGLETI*
Ga0187818_102902991	3300017823	Freshwater Sediment	GNQRRIPCLILDSSKEGFRLGGIHKLRRSQVVELILDENSSSSECCSVVWVGKAGSEKEGELGLEIV
Ga0187820_10421981	3300017924	Freshwater Sediment	IPCLVLDSSKEGFRLRGSFDLRRGQMVELIRDEETPSPERCRVVWVGKANSKQEGEIGLETV
Ga0187854_104947211	3300017938	Peatland	KRLPCLVLDSSKEGFRLRGSFHLRRGQVVELILEEYSPSSERCSVVWVGKAGSKQEGELGLEIV
Ga0187817_102501303	3300017955	Freshwater Sediment	ILDTSKEGFRLGGSFRLSRGQVVEIVLDDDPFRSVRCSVVWVGKAKSEQEGEVGLVSV
Ga0187817_108390612	3300017955	Freshwater Sediment	ASVVIRTPDFSQRRVPCLILDSSKEGFRVGGIHNLRRGQVVELVLGESSPSSARCKVVWIGKPGSKQEGEAGLESA
Ga0187804_104067271	3300018006	Freshwater Sediment	EGYRLRASFRLRRGQLVEIVHDPEPFRSVRCRVVWVGKSGSKQEGEVGLEIV
Ga0187869_105567731	3300018030	Peatland	NQKRLPCLVLDSSKEGFRLRGSFHLRRGQVVELILDENSPSAERCSVVWVGKAGSKQEGELGLEIV
Ga0179594_100367571	3300020170	Vadose Zone Soil	LDRDQRRLPCLVVDSSKEGFRLRGSFHLRRGQAVEIVLDEDPFSSVRCSVVWVGKAGSKQEGEAGLETI
Ga0179594_102502502	3300020170	Vadose Zone Soil	ISLDRSPKRLPCLVLDSSKEGFRLRGSFDLRRGQVVELILDGEMPSPERVVWVGKAGSKQEGEVGLETA
Ga0179594_102724722	3300020170	Vadose Zone Soil	EGFRLRGSFELRRGQVVEVILDEEMPSAERCSVVWVGRPGSKQEGKVGLEAI
Ga0179592_102716811	3300020199	Vadose Zone Soil	SSKEGFRLRGSFDLRRGHVVELILDEDPLRPERCSVIWVGKSGTKQEGEVGLETI
Ga0210407_109786293	3300020579	Soil	SKEGFRLRGSLHVRRGQVVELILDEDAPNSERCRVVWVGKPGSKQEGEVGLEIV
Ga0210400_101677714	3300021170	Soil	FRLRGNFDLRRGQVVELIVDEEMPSPERCSVVWVGKAGSQQDGEVGLKTL
Ga0210383_114987131	3300021407	Soil	PCLVLDSSKEGFRLRGRFDVRRGQIVEVSLDDEMPTPQRCSVVWVGKVGTKQEGEVGLEF
Ga0242654_100862282	3300022726	Soil	DSSKEGFRLRGSFHLRRGQVVELILDEEMPSSVRCSVAWVGKPGSKEKEEVGLETL
Ga0247691_10562931	3300024222	Soil	EGFRLRGSFDLRRGQVVELILDEETIGPERCSVVWVGKTGSKQEGELGLETV
Ga0247673_10395012	3300024224	Soil	RRPRRIPCLVLNSSKEGFRLRGSFDLRRGQVVELILDEETIGPERCSVVWVGKTGSKQEGELGLETV
Ga0208456_10945851	3300025441	Peatland	KRLPCLVLDSSKEGFRLRGSFHLRRGQVVELILEEYSPSAERCSVVWVGKAGSKQEGELGLEIV
Ga0208037_10346991	3300025448	Peatland	PCLVLDSSKEGFRLRGSFHLRRGQVVELILEEYSPSSERCSVVWVGKAGSKQEGELGLEI
Ga0208688_10338771	3300025480	Peatland	VLDSSKEGFRLRGSFHLRRGQVVELILEEYSPSSERCSVVWVGKAGSKQEGELGLEIV
Ga0208563_10326791	3300025501	Peatland	LPCLVLDSSKEGFRLRGSFHLRRGQVVELILEEYSPSSERCSVVWVGKAGSKQEGELGLEIV
Ga0207692_101743092	3300025898	Corn, Switchgrass And Miscanthus Rhizosphere	CLVLDSSKEGYRLRGNFQLRRGQFVEIVFDPEPFRSVRCLVVWVGRAGSKQEGEVGLEIC
Ga0207693_107575741	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	RLRGSFHLRRGQFIEIVFDPEPFSSVRCRVVWVGKAGSKQEGEIGLEIAR
Ga0207693_113972691	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	VVNPDRSPKRFPCLVLDSSREGFRLRENCRVKRGQVVEVIFDDDPLRPVRCSVVWVGKANSKQTGEAG
Ga0209350_100000126	3300026277	Grasslands Soil	LVINLDRKPKRLPCLVLDSSKEGFRLRGSFNLRRGQSVELILDEETVSPEWCRVAWVGKAGSKQESEIGLQTV
Ga0209237_12794831	3300026297	Grasslands Soil	CLVVDSSKGGFRLRGSFDLKRGQVVELILEEDMPSPERCMVVWVGKVGSKQQGEVGLETGRRSGSR
Ga0209647_12436541	3300026319	Grasslands Soil	ILDSSIEGFRLRGSFELRRGQVVEIILDEETPSAERCSVVWVGRAGSNEEGEIGLEAI
Ga0209152_103488252	3300026325	Soil	GFRLRGSFDLKRGQVVELILEEDMPSPERCMVVWVGKVGSKQQGEVGLETGRRSGSR
Ga0209802_12691532	3300026328	Soil	AVDSSKEGFRLRGSFNVWRGQVVQLILDENSPKRCKVVWVGKADSKQEGEIGLEAV
Ga0209804_12015311	3300026335	Soil	LDRSPKRLPCLVVDSSKGGFRLRGSFDLKRGQVVELILEEDMPSPERCMVVWVGKVGSKQQGEVGLETGRRSGSR
Ga0257158_11301841	3300026515	Soil	ASLVINLDCKPKELPCLVLDSSKEGFRLRGSSDLNCGQVVKLILDGEMPSPKCYGVVWVGKPGSKQEGEVGPETA
Ga0209806_12046542	3300026529	Soil	DSSKEGFRLRGSFHLIRRGQVVELTLDEGMPNPQLCSVVWVGKAGSKQEGEVGLETV
Ga0179587_109008531	3300026557	Vadose Zone Soil	QRRIPCLVVDASERGFRLHGNFRLRRGQAVELILDEEPLSAVRCSVVWIGKPDSKQGRRGRPRNSVEL
Ga0209076_12260711	3300027643	Vadose Zone Soil	VLDSSKEGFRLRGSFDLRRGQVVELILDEEMPSPERCSVVWVGKAGSKQEGEVGLKTI
Ga0209248_101632851	3300027729	Bog Forest Soil	PCLVLDSSKEGFRLRGRFDLRRGQIVEVSLDDEMPTPQRCSVVWVGKIGTKQEGEVGLEF
Ga0209073_103595281	3300027765	Agricultural Soil	LPCFVIDYSKEGFRLRGGLNLRRGQVVELILDEDPPISERCSVVWVGIAGSKQESEIGLETRRR
Ga0209139_102412851	3300027795	Bog Forest Soil	RLRGRFDLRRGQVVEVSLDDEMPTPQRCSVVWVGKVGTKQEGEVGLEFV
Ga0209488_102109413	3300027903	Vadose Zone Soil	DSSIEGFRLRGSFELRRGQVVEVILDEETPSAERCSVVWVGRAGSKQEGEVGLEAI
Ga0137415_111818021	3300028536	Vadose Zone Soil	PCLVLDSSKDGFRLRGTFHLRRGQVVEIILDEDPLDSVRCNVVWTGKAGSKYEGEVGLETVRLLKPL
Ga0170834_1045774821	3300031057	Forest Soil	SLVHDLKRQPCLVLDSSKNGLRVRGSFRVRRGQVVEIILDEDPLTSMQCSVAWVGKAGSKQEGEVGLEPFKRQL
Ga0307475_100205175	3300031754	Hardwood Forest Soil	MVSGCGSLDFRRGQVVELILDENPPMFERCSVVCVGKAGSKQEGEVGLETQ
Ga0307475_103523553	3300031754	Hardwood Forest Soil	DSSKEGYRLRGSFNLRRGQIVELVLDEDLPNPESCRVVWVGKVGSKQEGEAGLETV
Ga0307473_106291692	3300031820	Hardwood Forest Soil	LDRKPQRLPCLVLDSSKEGFRLRGSLDLRRGQVVELILNEDIPYPQRCSVVWVGKAGSKQEGEIGLEIV
Ga0306925_112658191	3300031890	Soil	DRDEKRLPCLVLDSSKEGYRLRGNFHLRRGQFVEIVFDPEPFRSVRCLVVWVGRAGSKQDGEVGLEIC
Ga0307479_108550012	3300031962	Hardwood Forest Soil	ERNQKRFPCLVLDSSQDGFRVRSSFHLRRGQIVEVVLDADPLNAVRCNVIWIGKTGSRHEGEAGLETV
Ga0307479_111359773	3300031962	Hardwood Forest Soil	PCLVIDSSKEGFRLRGSFDLRRGQVVELILGEDMPAPERCKVVWVGKPGSRREGELGLET
Ga0307479_118357651	3300031962	Hardwood Forest Soil	LVLDSSQDGFRVRSSFHLRRGQIVEVILDADPLNAVCCNVIWIGKTGSRHEGEAGLETV
Ga0307472_1000230323	3300032205	Hardwood Forest Soil	LDSSKEGYRLRGSFHLRRGQFVEIVFDPEPFSSVRCRVVWVGKAGSKQEGEIGLEIAR

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F095897

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences