Scaffold Ga0207993_1007956

Overview

Basic Information

• Taxon OID: 3300026270
• Scaffold ID: Ga0207993_1007956
• Source Dataset Name: Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP2014F12-01SV265 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3653
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (69.23%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Microbial And Viral Regulation Of Community Carbon Cycling Across Diverse Low-Oxygen Zones

Source Dataset Sampling Location

• Location Name: Pacific Ocean: Eastern Tropical North Pacific
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F049553	Metagenome / Metatranscriptome	146	Y
F065239	Metagenome / Metatranscriptome	128	Y
F084186	Metagenome	112	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0207993_100795611	F065239	N/A	MRGFSVIYVYMIKKKTLKERIEDAKKRNYLTLLQILDILLTNKGEKHYV
Ga0207993_10079563	F084186	AGGAG	MIDQIKFIEALKEIKSLLGAGANIGAMNKIDKTITEYQLEVEEFDKWAEAESQKDEYLRGTVVSDSSDSPFLAHPSEFPGEEIK
Ga0207993_10079567	F049553	AGGAG	MVEIVDTDKDIFDSNDNKIGYWRKLEDGANGDNLYEVYFDESKEDKGDYLQSQEFISDDENAEEEAYDYARSVIDE