Scaffold Ga0207993_1000009

Overview

Basic Information

• Taxon OID: 3300026270
• Scaffold ID: Ga0207993_1000009
• Source Dataset Name: Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP2014F12-01SV265 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 101470
• Total Scaffold Genes: 83
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 46 (55.42%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae (Source: IMG-VR)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Microbial And Viral Regulation Of Community Carbon Cycling Across Diverse Low-Oxygen Zones

Source Dataset Sampling Location

• Location Name: Pacific Ocean: Eastern Tropical North Pacific
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F064787	Metagenome	128	Y
F084340	Metagenome / Metatranscriptome	112	Y
F095604	Metagenome / Metatranscriptome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207993_100000944	F095604	N/A	MSDQGTEAARALRKLQELTAKYADMEMDADELNQSISERINATEELKNIIAKATQAKKDRERR
Ga0207993_100000945	F084340	GGAG	LTNINVTETEHPAAMHNQDVKACVEHIRDAIVDYVESEILTPGEFVKCVRTALADSISYHDNRAKLLKDAQELLTNNITNKEFIDYKL
Ga0207993_100000953	F064787	AGGA	MSDRLDRLINSSAKDLMGKGSTMYMSLKTAILDHDQKELLKKALFFYQKDACESQGKVSDADKGLIESIIDKLHMKHI