Scaffold Ga0209765_101487

Overview

Basic Information

• Taxon OID: 3300026243
• Scaffold ID: Ga0209765_101487
• Source Dataset Name: Upper troposphere microbial communities - SEAC4RS-RF10-011 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 590
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas → Pseudomonas paralcaligenes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Air → Outdoor Air → Unclassified → Unclassified → Upper Troposphere → Upper Troposphere Microbial Communities Above Oceans And Continental Usa That Affect Ice Or Cloud Condensation Nuclei

Source Dataset Sampling Location

• Location Name: USA and various oceans
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F091607	Metagenome / Metatranscriptome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209765_1014872	F091607	AGG	MSLELQISELNATIKTLNENILLLLGSKEQHSKVECSPVEPANLGQTQQQTFLPEVAKSDEYTREQLQILCLEATKRNAANRDIIKAIMLSNFEARKTGDLADNQINLCYSMIAQATKDD