3300026243: Upper troposphere microbial communities - SEAC4RS-RF10-011 (SPAdes)

Overview

Basic Information

• IMG/M Taxon OID: 3300026243
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0110167 | Gp0085220 | Ga0209765
• Sample Name: Upper troposphere microbial communities - SEAC4RS-RF10-011 (SPAdes)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 15429143
• Sequencing Scaffolds: 7
• Novel Protein Genes: 7
• Associated Families: 6

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses → Predicted Viral	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1
Not Available	3
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas → Pseudomonas paralcaligenes	1
All Organisms → cellular organisms → Bacteria	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Upper Troposphere Microbial Communities Above Oceans And Continental Usa That Affect Ice Or Cloud Condensation Nuclei
• Type: Environmental
• Taxonomy: Environmental → Air → Outdoor Air → Unclassified → Unclassified → Upper Troposphere → Upper Troposphere Microbial Communities Above Oceans And Continental Usa That Affect Ice Or Cloud Condensation Nuclei

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Aerosol (non-saline)

Location Information

• Location: USA and various oceans
• Coordinates
  • Lat. (^o): N/A
  • Long. (^o): N/A
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007965	Metagenome / Metatranscriptome	341	Y
F021533	Metagenome / Metatranscriptome	218	Y
F045749	Metagenome / Metatranscriptome	152	Y
F050360	Metagenome / Metatranscriptome	145	Y
F058997	Metagenome / Metatranscriptome	134	N
F091607	Metagenome / Metatranscriptome	107	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0209765_100030	All Organisms → Viruses → Predicted Viral	2328
Ga0209765_100354	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	947
Ga0209765_101151	Not Available	645
Ga0209765_101487	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas → Pseudomonas paralcaligenes	590
Ga0209765_101629	All Organisms → cellular organisms → Bacteria	571
Ga0209765_101638	Not Available	570
Ga0209765_102221	Not Available	518

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0209765_100030	Ga0209765_1000301	F058997	MIIYKDQQMTVREACKLMGIDCDDFMAWCKKFALQNYGYALNYYKRTLKFKKG
Ga0209765_100354	Ga0209765_1003541	F007965	MKKKKETRGGKRSFSGRKKSPYETKTIAFRVRVEFIEPIKKMVKDYVSERLKGYA
Ga0209765_101151	Ga0209765_1011512	F050360	MTNSYDNWFQDMLRDCENGLFGGDVHDESKDDVSDWTDVKTYLPEFSRMVWAAVPNVIICAHQTFLLYLDSDGQWRDNTGCLFGRRVNFWQYAEVPFFEGSC
Ga0209765_101487	Ga0209765_1014872	F091607	MSLELQISELNATIKTLNENILLLLGSKEQHSKVECSPVEPANLGQTQQQTFLPEVAKSDEYTREQLQILCLEATKRNAANRDIIKAIMLSNFEARKTGDLADNQINLCYSMIAQATKDD
Ga0209765_101629	Ga0209765_1016291	F058997	ERIMIIYKVQEMTVREACALMGIDCDDFMAWCKKFALQNYSYAMNYYKRTLKFKK
Ga0209765_101638	Ga0209765_1016381	F021533	MKTIAATSINDVITPVSEIPTDAKLIVFNGTEYVIYEDGDELPVIE
Ga0209765_102221	Ga0209765_1022211	F045749	TNDDRRFCVMYGRIQNESELFDYFGGRDEAGEYFENLFRESELHAGAIKTFILNHTISEDFKPSGRAPDTVSRRLMIQASVSPEQSLVEDLINKHECGVVNGRILDVTWFKSLCEGEGDVLPQSRTLAHILNDIGYQQITGRRIKIKKTRENHYIWFKVKKGVDEESVKNEV