NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209649_1000759

Scaffold Ga0209649_1000759


Overview

Basic Information
Taxon OID3300026235 Open in IMG/M
Scaffold IDGa0209649_1000759 Open in IMG/M
Source Dataset NameUpper troposphere microbial communities from Midwestern USA - DC3-114 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1277
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Air → Outdoor Air → Unclassified → Unclassified → Upper Troposphere → Upper Troposphere Microbial Communities Above Oceans And Continental Usa That Affect Ice Or Cloud Condensation Nuclei

Source Dataset Sampling Location
Location NameMidwestern USA
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F068942Metagenome124N

Sequences

Protein IDFamilyRBSSequence
Ga0209649_10007592F068942N/ARKILSLPTLALCFTLGSVFFAGCNENYIENTETKVRWSNVKNPKYGDYINITLKAEGETFTTVGDHSQIFFGYDASTLETFTRHRFPEVDKDTAYYKDIVIYLTRNESKGTATLKLVAPPNRTRQPKQFKFSVSVNPPATYFFNVRQPALPAKAQ
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