3300026235: Upper troposphere microbial communities from Midwestern USA - DC3-114 (SPAdes)

Overview

Basic Information

• IMG/M Taxon OID: 3300026235
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0110167 | Gp0085206 | Ga0209649
• Sample Name: Upper troposphere microbial communities from Midwestern USA - DC3-114 (SPAdes)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 42455276
• Sequencing Scaffolds: 10
• Novel Protein Genes: 10
• Associated Families: 9

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae	1
Not Available	7
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Sphingobacteriia → Sphingobacteriales → Sphingobacteriaceae → Pedobacter → unclassified Pedobacter → Pedobacter sp. BS3	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Upper Troposphere Microbial Communities Above Oceans And Continental Usa That Affect Ice Or Cloud Condensation Nuclei
• Type: Environmental
• Taxonomy: Environmental → Air → Outdoor Air → Unclassified → Unclassified → Upper Troposphere → Upper Troposphere Microbial Communities Above Oceans And Continental Usa That Affect Ice Or Cloud Condensation Nuclei

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Aerosol (non-saline)

Location Information

• Location: Midwestern USA
• Coordinates
  • Lat. (^o): N/A
  • Long. (^o): N/A
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002371	Metagenome / Metatranscriptome	566	Y
F011936	Metagenome / Metatranscriptome	285	Y
F032274	Metagenome / Metatranscriptome	180	Y
F032313	Metagenome	180	N
F045749	Metagenome / Metatranscriptome	152	Y
F068773	Metagenome / Metatranscriptome	124	N
F068942	Metagenome	124	N
F076005	Metagenome / Metatranscriptome	118	N
F080164	Metagenome	115	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0209649_1000759	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae	1277
Ga0209649_1001087	Not Available	1144
Ga0209649_1001298	Not Available	1074
Ga0209649_1001975	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	931
Ga0209649_1004333	Not Available	704
Ga0209649_1006800	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Sphingobacteriia → Sphingobacteriales → Sphingobacteriaceae → Pedobacter → unclassified Pedobacter → Pedobacter sp. BS3	588
Ga0209649_1007110	Not Available	578
Ga0209649_1007249	Not Available	574
Ga0209649_1008751	Not Available	535
Ga0209649_1009118	Not Available	526

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0209649_1000759	Ga0209649_10007592	F068942	RKILSLPTLALCFTLGSVFFAGCNENYIENTETKVRWSNVKNPKYGDYINITLKAEGETFTTVGDHSQIFFGYDASTLETFTRHRFPEVDKDTAYYKDIVIYLTRNESKGTATLKLVAPPNRTRQPKQFKFSVSVNPPATYFFNVRQPALPAKAQ
Ga0209649_1001087	Ga0209649_10010873	F032274	MQGSFDFTEQIEIVKHKKRKPFEARQDWRLAPKIIVTEEYIALDKKLEPIENELFDLIKQMPIAVEKKIKGKICFIETGNKMDESLVNRVRQLRKQASKIGRELDELFFRTNKKWALFYDYIDKT
Ga0209649_1001298	Ga0209649_10012982	F080164	MRPTSFVLSLLLGMVGLALCAAPQVTLRERASAFPLITEKDESEIIAPYAWRLPVVPLSLDNREIRNFAKYPALPSLSEGKLTVRVLVVGDTVAVHQDLMDDFAKRCRTTLGFGVRTAPKLFGIKGMHVYGVQKDGSRQAVDEQVTLHLPGFEKAEKPLHYKEQTGQLVLCEYYGSHRGDLLLNAANARPEIFGELCPVVDFHFPVELRRAYAWLLLEIELEDGTKLSTSLQHYDEQTSILDHPDRS
Ga0209649_1001975	Ga0209649_10019751	F045749	ISDEFKASGRAPDTSSRQAMIQATISPEQCSVEDLINKHECSVVNGRILDVTWLNELCVIDGDMLPPTRTLGHILSDMGYSQIEGRRVKIQKTRENHYIWFKNVAGAASSDVIEQVRDFFKKGLDEVPF
Ga0209649_1004333	Ga0209649_10043333	F076005	MKHFKVRVQYLNGIDFLFECDAVTGWQAGALARVAGRLAGLGGAMDVKETIVQEVV
Ga0209649_1006800	Ga0209649_10068002	F002371	MKLKKKLENRGGTRQGSGAKPKYNEETKTVAFNCPLSKVDELKLIVKAKLSEWSVK
Ga0209649_1007110	Ga0209649_10071101	F032313	MYRFLILIFALMLMAFDNDTPQEKPREQEKHEVPVPKPKPQFDEVGERIWYGQTPAMRLDSTDYGAGLIWVLEMRTSSITKQRFDSLFKQTVWEIKDICAVETDLSLAKKIPRFVGGSIAKEFTCRNGVILRHMQGIDINCVDTVNYVYNEDLNEIVLEGTGI
Ga0209649_1007249	Ga0209649_10072491	F068773	MTTENLNLSDLGLGDNSQSAINEKMPRRGAEGRGQSRESRKSLSEHDTARKPERVPMYAQRTMIDTTLIPEGFHGHWVSNNPAGRIDMLLRAGYDFVTKDQNVYSSHVTENGVDSRVSKSGSDGVTLYLMIIPLELYEADQEAKAEYCIHKQNPSCLLRLCLSIPYYVEKLVIKPRM
Ga0209649_1008751	Ga0209649_10087511	F011936	KIRGVDLLEQLHETRLQKLEDGHDMLSRDYSRLNDAIVKISESLMALVVIQEQNKSIMQCMEHQLTTIEKLDARIDAIELQMPQLVESRQWLMIGLGLILSMVVVGLIALVIK
Ga0209649_1009118	Ga0209649_10091181	F045749	VAISTWWAGEGGLAKADRRFCVMYGRIQNESELFDYFGGRDEAGEYFENLFRESELHAGAIKTFILNHTISEDFKPSGRAPDTVSRRLMIQASVSPEQSLVEDLINKHECGVVNGRILDVTWFKSLCEGEGDVLPQSRTLAHILNDMGYQQITGRRTKIKKTRENHYIWFKAKK