NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209903_1022270

Scaffold Ga0209903_1022270


Overview

Basic Information
Taxon OID3300026216 Open in IMG/M
Scaffold IDGa0209903_1022270 Open in IMG/M
Source Dataset NamePermafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil leachate replicate DNA2013-051 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1034
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Permafrost → Soil → Permafrost Soil Microbial Communities From The Arctic, To Analyse Light Accelerated Degradation Of Dissolved Organic Matter (Dom)

Source Dataset Sampling Location
Location NameAlaska, USA
CoordinatesLat. (o)68.6137Long. (o)-149.3144Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F036032Metagenome / Metatranscriptome171Y
F066956Metagenome / Metatranscriptome126Y

Sequences

Protein IDFamilyRBSSequence
Ga0209903_10222702F036032N/ALALNALDLMPRGLRLLGIQLGGSSASQSPLRAIHNRCHHLQIA
Ga0209903_10222703F066956GGAGLPLRFEKKLGIIQNPFADCGRPLAPRGIQLAGLPRIAVVFGEDGGHPLAVFQALACHRHQKLHRHLRQNLALAHLLLDRFRQNLRQRQ

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