Scaffold Ga0207989_1036676

Overview

Basic Information

• Taxon OID: 3300026209
• Scaffold ID: Ga0207989_1036676
• Source Dataset Name: Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201406SV65 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1448
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Microbial And Viral Regulation Of Community Carbon Cycling Across Diverse Low-Oxygen Zones

Source Dataset Sampling Location

• Location Name: Pacific Ocean: Eastern Tropical North Pacific
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011448	Metagenome	291	Y
F087023	Metagenome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207989_10366761	F087023	N/A	EIFNQDIYVTHEAITAGGACNYYIELEQVKLDLNENTVATLKDIRNIASQ
Ga0207989_10366763	F011448	AGG	MAYNLKDVFYLSTSATIDKETANGGSAQLDLSAYIDPIARGRTKGTGLAIYKVHWHVMDDDKSAPIDDAEAGVFSFGLQAGAGLGDVATGGFSIGDDFYSASNALTVSTGQFYGPRSQIANASTTATMFPNVTLNPSIEVPYVVVRDNVCMTYQVSSNMTSDTLLSCRLEVAQVSLDQATLNQLLR