NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome Family F087023

Metagenome Family F087023

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Overview Alignments Structure & Topology Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F087023
Family Type Metagenome
Number of Sequences 110
Average Sequence Length 56 residues
Representative Sequence VFDNEIFNQDIYITHTDIEGSAAVNYYIELEQVKLDLNENTVATLKDIRNLA
Number of Associated Samples 80
Number of Associated Scaffolds 110

Quality Assessment
Transcriptomic Evidence No
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 0.93 %
% of genes near scaffold ends (potentially truncated) 95.45 %
% of genes from short scaffolds (< 2000 bps) 92.73 %
Associated GOLD sequencing projects 73
AlphaFold2 3D model prediction Yes
3D model pTM-score0.38

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (66.364 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Marine → Strait → Unclassified → Seawater
(40.909 % of family members)
Environment Ontology (ENVO) Unclassified
(94.545 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Saline → Water (saline)
(86.364 % of family members)



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Multiple Sequence Alignments

Select alignment to view:      


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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 16.25%    β-sheet: 17.50%    Coil/Unstructured: 66.25%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.38
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
UnclassifiedrootN/A66.36 %
All OrganismsrootAll Organisms33.64 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300001472|JGI24004J15324_10094058All Organisms → Viruses → unclassified viruses → Circular genetic element sp.783Open in IMG/M
3300001516|TahiMoana_1057517Not Available658Open in IMG/M
3300001516|TahiMoana_1081701Not Available624Open in IMG/M
3300001678|Mariner_1016057Not Available2383Open in IMG/M
3300004460|Ga0066222_1330732Not Available836Open in IMG/M
3300004829|Ga0068515_125053All Organisms → Viruses → unclassified viruses → Circular genetic element sp.745Open in IMG/M
3300005514|Ga0066866_10301480Not Available547Open in IMG/M
3300006738|Ga0098035_1272197Not Available555Open in IMG/M
3300006752|Ga0098048_1192612Not Available602Open in IMG/M
3300006753|Ga0098039_1259783Not Available583Open in IMG/M
3300006754|Ga0098044_1079284All Organisms → Viruses → unclassified viruses → Circular genetic element sp.1363Open in IMG/M
3300006754|Ga0098044_1169922All Organisms → Viruses → unclassified viruses → Circular genetic element sp.867Open in IMG/M
3300006793|Ga0098055_1158144All Organisms → Viruses → unclassified viruses → Circular genetic element sp.870Open in IMG/M
3300006793|Ga0098055_1304369Not Available595Open in IMG/M
3300006927|Ga0098034_1223470Not Available523Open in IMG/M
3300006928|Ga0098041_1202303Not Available636Open in IMG/M
3300006929|Ga0098036_1141591All Organisms → Viruses → unclassified viruses → Circular genetic element sp.736Open in IMG/M
3300006947|Ga0075444_10315648All Organisms → Viruses → unclassified viruses → Circular genetic element sp.600Open in IMG/M
3300008050|Ga0098052_1195363Not Available788Open in IMG/M
3300008216|Ga0114898_1113293Not Available802Open in IMG/M
3300008216|Ga0114898_1168881All Organisms → Viruses → unclassified viruses → Circular genetic element sp.622Open in IMG/M
3300008218|Ga0114904_1114956All Organisms → Viruses → unclassified viruses → Circular genetic element sp.647Open in IMG/M
3300008219|Ga0114905_1140906Not Available810Open in IMG/M
3300008220|Ga0114910_1093551All Organisms → Viruses → unclassified viruses → Circular genetic element sp.902Open in IMG/M
3300009412|Ga0114903_1151532Not Available506Open in IMG/M
3300009418|Ga0114908_1270206Not Available509Open in IMG/M
3300009528|Ga0114920_10188076All Organisms → Viruses → unclassified viruses → Circular genetic element sp.1368Open in IMG/M
3300009602|Ga0114900_1191307Not Available506Open in IMG/M
3300009603|Ga0114911_1086254Not Available929Open in IMG/M
3300009603|Ga0114911_1146112Not Available665Open in IMG/M
3300009604|Ga0114901_1107661Not Available871Open in IMG/M
3300009605|Ga0114906_1199100Not Available671Open in IMG/M
3300011253|Ga0151671_1059345All Organisms → Viruses → unclassified viruses → Circular genetic element sp.835Open in IMG/M
3300013098|Ga0164320_10781304Not Available512Open in IMG/M
3300017709|Ga0181387_1046544Not Available861Open in IMG/M
3300017714|Ga0181412_1072377Not Available839Open in IMG/M
3300017719|Ga0181390_1077673Not Available922Open in IMG/M
3300017724|Ga0181388_1029436All Organisms → Viruses → unclassified viruses → Circular genetic element sp.1355Open in IMG/M
3300017724|Ga0181388_1098181Not Available697Open in IMG/M
3300017729|Ga0181396_1046047Not Available869Open in IMG/M
3300017729|Ga0181396_1073724All Organisms → Viruses → unclassified viruses → Circular genetic element sp.687Open in IMG/M
3300017733|Ga0181426_1133050Not Available502Open in IMG/M
3300017735|Ga0181431_1043012All Organisms → Viruses → unclassified viruses → Circular genetic element sp.1026Open in IMG/M
3300017735|Ga0181431_1146921Not Available524Open in IMG/M
3300017738|Ga0181428_1006667All Organisms → Viruses → unclassified viruses → Circular genetic element sp.2628Open in IMG/M
3300017740|Ga0181418_1148932Not Available562Open in IMG/M
3300017745|Ga0181427_1026999Not Available1433Open in IMG/M
3300017745|Ga0181427_1057628Not Available958Open in IMG/M
3300017748|Ga0181393_1107934All Organisms → Viruses → unclassified viruses → Circular genetic element sp.712Open in IMG/M
3300017748|Ga0181393_1120491Not Available665Open in IMG/M
3300017750|Ga0181405_1058372Not Available1008Open in IMG/M
3300017751|Ga0187219_1066894All Organisms → Viruses → Predicted Viral1149Open in IMG/M
3300017752|Ga0181400_1099744Not Available853Open in IMG/M
3300017753|Ga0181407_1128942Not Available629Open in IMG/M
3300017753|Ga0181407_1152434All Organisms → Viruses → unclassified viruses → Circular genetic element sp.570Open in IMG/M
3300017757|Ga0181420_1016320Not Available2483Open in IMG/M
3300017757|Ga0181420_1047926Not Available1374Open in IMG/M
3300017757|Ga0181420_1114330All Organisms → Viruses → unclassified viruses → Circular genetic element sp.824Open in IMG/M
3300017757|Ga0181420_1215104Not Available554Open in IMG/M
3300017765|Ga0181413_1048836Not Available1313Open in IMG/M
3300017767|Ga0181406_1168756Not Available654Open in IMG/M
3300017772|Ga0181430_1060167All Organisms → Viruses → unclassified viruses → Circular genetic element sp.1167Open in IMG/M
3300017772|Ga0181430_1154869Not Available665Open in IMG/M
3300017772|Ga0181430_1222128Not Available536Open in IMG/M
3300017773|Ga0181386_1162387Not Available680Open in IMG/M
3300017775|Ga0181432_1046467All Organisms → Viruses → unclassified viruses → Circular genetic element sp.1206Open in IMG/M
3300017775|Ga0181432_1057306All Organisms → Viruses → unclassified viruses → Circular genetic element sp.1101Open in IMG/M
3300017775|Ga0181432_1105350All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium843Open in IMG/M
3300017775|Ga0181432_1142605Not Available733Open in IMG/M
3300017775|Ga0181432_1152209Not Available712Open in IMG/M
3300017775|Ga0181432_1266040Not Available542Open in IMG/M
3300017775|Ga0181432_1296012Not Available513Open in IMG/M
3300017775|Ga0181432_1310994Not Available500Open in IMG/M
3300017776|Ga0181394_1040684Not Available1596Open in IMG/M
3300017779|Ga0181395_1060035Not Available1244Open in IMG/M
3300017782|Ga0181380_1050137Not Available1496Open in IMG/M
3300017783|Ga0181379_1265236Not Available589Open in IMG/M
3300017786|Ga0181424_10067695All Organisms → Viruses → unclassified viruses → Circular genetic element sp.1543Open in IMG/M
3300020473|Ga0211625_10383625All Organisms → Viruses → unclassified viruses → Circular genetic element sp.708Open in IMG/M
3300021979|Ga0232641_1241416Not Available684Open in IMG/M
(restricted) 3300024517|Ga0255049_10213005All Organisms → Viruses → unclassified viruses → Circular genetic element sp.883Open in IMG/M
3300025042|Ga0207889_1011301All Organisms → Viruses → unclassified viruses → Circular genetic element sp.832Open in IMG/M
3300025052|Ga0207906_1023095Not Available863Open in IMG/M
3300025069|Ga0207887_1072391Not Available562Open in IMG/M
3300025069|Ga0207887_1085473Not Available512Open in IMG/M
3300025118|Ga0208790_1096000All Organisms → Viruses → unclassified viruses → Circular genetic element sp.867Open in IMG/M
3300025125|Ga0209644_1061244Not Available870Open in IMG/M
3300025128|Ga0208919_1194108Not Available612Open in IMG/M
3300025133|Ga0208299_1194182Not Available607Open in IMG/M
3300025251|Ga0208182_1030157Not Available1246Open in IMG/M
3300025282|Ga0208030_1023770All Organisms → Viruses → unclassified viruses → Circular genetic element sp.1977Open in IMG/M
3300025282|Ga0208030_1113437Not Available670Open in IMG/M
3300025287|Ga0207903_1055821All Organisms → Viruses → unclassified viruses → Circular genetic element sp.697Open in IMG/M
3300025301|Ga0208450_1088173Not Available694Open in IMG/M
3300025301|Ga0208450_1128995All Organisms → Viruses → unclassified viruses → Circular genetic element sp.531Open in IMG/M
3300025305|Ga0208684_1157342Not Available528Open in IMG/M
3300026206|Ga0207988_1099126All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium672Open in IMG/M
3300026209|Ga0207989_1036676Not Available1448Open in IMG/M
3300026257|Ga0208407_1152763All Organisms → Viruses → unclassified viruses → Circular genetic element sp.700Open in IMG/M
(restricted) 3300027856|Ga0255054_10233839All Organisms → Viruses → unclassified viruses → Circular genetic element sp.899Open in IMG/M
(restricted) 3300027856|Ga0255054_10303877Not Available777Open in IMG/M
(restricted) 3300027856|Ga0255054_10635741Not Available515Open in IMG/M
(restricted) 3300027865|Ga0255052_10388049Not Available683Open in IMG/M
(restricted) 3300027868|Ga0255053_10289056All Organisms → Viruses → unclassified viruses → Circular genetic element sp.791Open in IMG/M
(restricted) 3300027881|Ga0255055_10398263Not Available741Open in IMG/M
3300031623|Ga0302123_10052201All Organisms → Viruses → unclassified viruses → Circular genetic element sp.2256Open in IMG/M
3300032278|Ga0310345_10095145Not Available2598Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).



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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
SeawaterEnvironmental → Aquatic → Marine → Strait → Unclassified → Seawater40.91%
MarineEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Marine22.73%
Deep OceanEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean19.09%
SeawaterEnvironmental → Aquatic → Marine → Inlet → Unclassified → Seawater6.36%
MarineEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Marine1.82%
Hydrothermal Vent PlumeEnvironmental → Aquatic → Marine → Hydrothermal Vents → Black Smokers → Hydrothermal Vent Plume1.82%
SeawaterEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Seawater0.91%
Deep SubsurfaceEnvironmental → Aquatic → Marine → Oceanic → Sediment → Deep Subsurface0.91%
MarineEnvironmental → Aquatic → Marine → Coastal → Unclassified → Marine0.91%
MarineEnvironmental → Aquatic → Marine → Coastal → Unclassified → Marine0.91%
Marine WaterEnvironmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine Water0.91%
Hydrothermal Vent FluidsEnvironmental → Aquatic → Marine → Hydrothermal Vents → Diffuse Flow → Hydrothermal Vent Fluids0.91%
Black Smokers Hydrothermal PlumeEnvironmental → Aquatic → Marine → Hydrothermal Vents → Black Smokers → Black Smokers Hydrothermal Plume0.91%
Marine SedimentEnvironmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Marine Sediment0.91%

Visualization
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Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OIDSample NameHabitat TypeIMG/M Link
3300001472Marine viral communities from the Pacific Ocean - LP-32EnvironmentalOpen in IMG/M
3300001516Hydrothermal vent plume microbial communities from Tahi Moana, Pacific Ocean, of black smokersEnvironmentalOpen in IMG/M
3300001678Black smokers hydrothermal plume microbial communities from Mariner, Lau Basin, Pacific Ocean -IDBAEnvironmentalOpen in IMG/M
3300004460Marine viral communities from Newfoundland, Canada BC-1EnvironmentalOpen in IMG/M
3300004829Marine water microbial communities from the Pohang Bay, Korea with extracellular vesicles - Pohang-EVsEnvironmentalOpen in IMG/M
3300005514Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP2014F12-01SV263EnvironmentalOpen in IMG/M
3300006738Marine viral communities from the Subarctic Pacific Ocean - 3_ETSP_OMZ_AT15126 metaGEnvironmentalOpen in IMG/M
3300006752Marine viral communities from the Subarctic Pacific Ocean - 13_ETSP_OMZ_AT15268 metaGEnvironmentalOpen in IMG/M
3300006753Marine viral communities from the Subarctic Pacific Ocean - 6_ETSP_OMZ_AT15160 metaGEnvironmentalOpen in IMG/M
3300006754Marine viral communities from the Subarctic Pacific Ocean - 10_ETSP_OMZ_AT15264 metaGEnvironmentalOpen in IMG/M
3300006793Marine viral communities from the Subarctic Pacific Ocean - 17_ETSP_OMZ_AT15314 metaGEnvironmentalOpen in IMG/M
3300006927Marine viral communities from the Subarctic Pacific Ocean - 2_ETSP_OMZ_AT15125 metaGEnvironmentalOpen in IMG/M
3300006928Marine viral communities from the Subarctic Pacific Ocean - 8_ETSP_OMZ_AT15162 metaGEnvironmentalOpen in IMG/M
3300006929Marine viral communities from the Subarctic Pacific Ocean - 4_ETSP_OMZ_AT15127 metaGEnvironmentalOpen in IMG/M
3300006947Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG017-DNAEnvironmentalOpen in IMG/M
3300008050Marine viral communities from the Subarctic Pacific Ocean - 15_ETSP_OMZ_AT15312 metaGEnvironmentalOpen in IMG/M
3300008216Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_GeostarEnvironmentalOpen in IMG/M
3300008218Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_s6EnvironmentalOpen in IMG/M
3300008219Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_b05EnvironmentalOpen in IMG/M
3300008220Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_908EnvironmentalOpen in IMG/M
3300009412Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_s2EnvironmentalOpen in IMG/M
3300009418Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_s17EnvironmentalOpen in IMG/M
3300009528Deep subsurface microbial communities from South Pacific Ocean to uncover new lineages of life (NeLLi) - Chile_00310 metaGEnvironmentalOpen in IMG/M
3300009602Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_231EnvironmentalOpen in IMG/M
3300009603Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_904EnvironmentalOpen in IMG/M
3300009604Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_s16EnvironmentalOpen in IMG/M
3300009605Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_M9EnvironmentalOpen in IMG/M
3300011253Seawater microbial communities from Japan Sea near Toyama Prefecture, Japan - 2014_2, permeateEnvironmentalOpen in IMG/M
3300013098Subseafloor sediment microbial communities from Guaymas Basin, Gulf of California, Mexico - Guay11, Core 4567-28, 0-3 cmEnvironmentalOpen in IMG/M
3300017709Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 10 SPOT_SRF_2010-04-27EnvironmentalOpen in IMG/M
3300017714Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 35 SPOT_SRF_2012-08-15EnvironmentalOpen in IMG/M
3300017719Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 13 SPOT_SRF_2010-07-21EnvironmentalOpen in IMG/M
3300017724Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 11 SPOT_SRF_2010-05-17EnvironmentalOpen in IMG/M
3300017728Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 42 SPOT_SRF_2013-04-24EnvironmentalOpen in IMG/M
3300017729Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 19 SPOT_SRF_2011-01-11EnvironmentalOpen in IMG/M
3300017733Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 49 SPOT_SRF_2013-12-23EnvironmentalOpen in IMG/M
3300017735Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 54 SPOT_SRF_2014-05-21EnvironmentalOpen in IMG/M
3300017738Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 51 SPOT_SRF_2014-02-12EnvironmentalOpen in IMG/M
3300017740Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 41 SPOT_SRF_2013-03-13EnvironmentalOpen in IMG/M
3300017745Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 50 SPOT_SRF_2014-01-15EnvironmentalOpen in IMG/M
3300017748Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 16 SPOT_SRF_2010-10-21EnvironmentalOpen in IMG/M
3300017750Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 28 SPOT_SRF_2011-11-29EnvironmentalOpen in IMG/M
3300017751Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 13 SPOT_SRF_2010-07-21 (version 2)EnvironmentalOpen in IMG/M
3300017752Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 23 SPOT_SRF_2011-06-22EnvironmentalOpen in IMG/M
3300017753Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 30 SPOT_SRF_2012-01-26EnvironmentalOpen in IMG/M
3300017757Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 43 SPOT_SRF_2013-05-22EnvironmentalOpen in IMG/M
3300017765Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 36 SPOT_SRF_2012-09-28EnvironmentalOpen in IMG/M
3300017767Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 29 SPOT_SRF_2011-12-20EnvironmentalOpen in IMG/M
3300017772Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 53 SPOT_SRF_2014-04-10EnvironmentalOpen in IMG/M
3300017773Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 9 SPOT_SRF_2010-03-24EnvironmentalOpen in IMG/M
3300017775Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 55 SPOT_SRF_2014-07-17EnvironmentalOpen in IMG/M
3300017776Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 17 SPOT_SRF_2010-11-23EnvironmentalOpen in IMG/M
3300017779Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 18 SPOT_SRF_2010-12-16EnvironmentalOpen in IMG/M
3300017782Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 3 SPOT_SRF_2009-08-19EnvironmentalOpen in IMG/M
3300017783Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 2 SPOT_SRF_2009-07-10EnvironmentalOpen in IMG/M
3300017786Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 47 SPOT_SRF_2013-09-18EnvironmentalOpen in IMG/M
3300020473Marine microbial communities from Tara Oceans - TARA_B100000700 (ERX555932-ERR598948)EnvironmentalOpen in IMG/M
3300021979Hydrothermal fluids microbial communities from Mariana Back-Arc Basin vent fields, Pacific Ocean - Hafa_FS926 _150kmerEnvironmentalOpen in IMG/M
3300024517 (restricted)Seawater microbial communities from Jervis Inlet, British Columbia, Canada - JV7_2_3EnvironmentalOpen in IMG/M
3300025042Marine viral communities from the Pacific Ocean - LP-47 (SPAdes)EnvironmentalOpen in IMG/M
3300025052Marine viral communities from the Pacific Ocean - LP-37 (SPAdes)EnvironmentalOpen in IMG/M
3300025069Marine viral communities from the Pacific Ocean - LP-38 (SPAdes)EnvironmentalOpen in IMG/M
3300025118Marine viral communities from the Subarctic Pacific Ocean - 10_ETSP_OMZ_AT15264 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025125Marine viral communities from the Pacific Ocean - ETNP_2_1000 (SPAdes)EnvironmentalOpen in IMG/M
3300025128Marine viral communities from the Subarctic Pacific Ocean - 4_ETSP_OMZ_AT15127 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025133Marine viral communities from the Subarctic Pacific Ocean - 15_ETSP_OMZ_AT15312 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025251Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_906 (SPAdes)EnvironmentalOpen in IMG/M
3300025282Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_M9 (SPAdes)EnvironmentalOpen in IMG/M
3300025287Marine viral communities from the Deep Pacific Ocean - MSP-131 (SPAdes)EnvironmentalOpen in IMG/M
3300025301Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_908 (SPAdes)EnvironmentalOpen in IMG/M
3300025305Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_b05 (SPAdes)EnvironmentalOpen in IMG/M
3300026206Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201310SV74 (SPAdes)EnvironmentalOpen in IMG/M
3300026209Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201406SV65 (SPAdes)EnvironmentalOpen in IMG/M
3300026257Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201406SV69 (SPAdes)EnvironmentalOpen in IMG/M
3300027856 (restricted)Seawater microbial communities from Jervis Inlet, British Columbia, Canada - JV7_2_23EnvironmentalOpen in IMG/M
3300027865 (restricted)Seawater microbial communities from Jervis Inlet, British Columbia, Canada - JV7_2_21EnvironmentalOpen in IMG/M
3300027868 (restricted)Seawater microbial communities from Jervis Inlet, British Columbia, Canada - JV7_2_22EnvironmentalOpen in IMG/M
3300027881 (restricted)Seawater microbial communities from Jervis Inlet, British Columbia, Canada - JV7_2_27EnvironmentalOpen in IMG/M
3300031623Marine microbial communities from Western Arctic Ocean, Canada - CB21_32.1EnvironmentalOpen in IMG/M
3300032278Marine microbial communities from station ALOHA, North Pacific Subtropical Gyre - HC15-DNA-20-500_MGEnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID Sample Taxon ID Habitat Sequence
JGI24004J15324_1009405813300001472MarineGHNYPLEFVTIFDNMTFNQDIYITHVDNLAATACNYYIELEQVKLDLNENTVATLKDIRNITQ*
TahiMoana_105751713300001516Hydrothermal Vent PlumeGHGYWETTIFDQEVFNQDIYVTNRDEGGSTIACNYYIELEQFKLDLNENTVATLKDIRNQA*
TahiMoana_108170113300001516Hydrothermal Vent PlumeYSDESVVIADREIFNQDIFITCWEHHQPGNEFINYYIELEQFKLDLNENTVATLKDIRNNA*
Mariner_101605713300001678Black Smokers Hydrothermal PlumeDIYVTNRDEGGSTIACNYYIELEQFKLDLNENTVATLKDIRNQA*
Ga0066222_133073223300004460MarineVERPFANSIIFDNTIINQDIYVTHMDIGGSQSNNYYIELEQIKLDSNETAVATLKNIKNR
Ga0068515_12505323300004829Marine WaterTLSQVDIIFDNMTFNQDIFITHNEKAGSGKINYYIELEQFRLDLNENTVATLKDIRNIKSQ*
Ga0066866_1030148013300005514MarineDKATLGPASTVVVFDNTTFNQDIYITHEDTGGSQPCNYYIELEQIKLDINENTVATLKDIRNIASQ*VNNILLIKKQ*
Ga0098035_127219723300006738MarineYPADQMIIFDNMTFNQDIYVTHEDTVGSQPCNYYIELEQIKLDLGENTVATLKDIRNIESQ*
Ga0098048_119261223300006752MarinePEDFTVIFDNMTFNQDIYIANNDKLAGAGQPINYYIELEQIKLDLSENTVATLKDIRNIARQ*ANNIL*
Ga0098039_125978313300006753MarineWQTHNILIFDNEIFNQDIYVTHYDAIAHVGEPVNYYIELEQIKLDLNENTVATLKDIRNLS*
Ga0098044_107928413300006754MarineQDIYVTHEDTVGSQPCNYYIELELIKLDLNENTVATLKDIRNIESQ*
Ga0098044_116992213300006754MarineANDPYTQSIIFDNEIFNQDIYITHHEDTSDKPCNYYIELEQVKLDLSENTIATLKDIRNIVSQ*
Ga0098055_115814413300006793MarineTTGYPADQMIIFDNMTFNQDIYVTHEDTVGSQPCNYYIELEQIKLDLTENTVATLKDIRNIESQ*
Ga0098055_130436913300006793MarineVFNQDIYITNKGHDDLSSMNYYIELEQVQLDLNENTVATLKDIRNIESGKYV*
Ga0098034_122347013300006927MarineHLYADDEDVVFDNEVFNQDIFITHVDPQGNAINYYIELEQVKLDLNENTVATLKDIRNLS
Ga0098041_120230313300006928MarineTFNQDIYLTHSDVSTEGKAVNYHIELEQVKLDLNENTVATLKDIRNIASQ*
Ga0098036_114159113300006929MarineIFNQDIYITHTETAGSESVNYYIELEQVKLDLNENTVATLKDIRNIASQ*
Ga0075444_1031564823300006947MarineVVFDNMTFNQDIFVAHTDESGSSSPCNYYIELEQTKLDLNENTVATLKDIRNQA*
Ga0098052_119536333300008050MarineDNITFNQDIHLGFKNLDAAIDMNYHIELELVKLDLNENTVATLKDIRNIKGQ*
Ga0114898_111329323300008216Deep OceanIFDNQVFNQDIFITYNDLQGSDAKVNYYIELEQVKLDLGENTVATLKDIRNIEGQSFASTP*
Ga0114898_116888113300008216Deep OceanIVFDNEVFNQDIYITNNDSIGSNAMNYYIELEQIKLDLSENTVATVKDIRNQEARFI*
Ga0114904_111495623300008218Deep OceanAYPTTQVIIFDNMVFNQDIYVTHTELRSTIACNYMIELEQVKLDLNENTVATLKDIRNLA
Ga0114905_114090633300008219Deep OceanFDNEIFNQDIYISQRGDAASAVINYYIELEQIKLDLNENTVATLKDIRNETLTV*
Ga0114910_109355133300008220Deep OceanVTHTELRSTIACNYMIELEQVKLDLNENTVATLKDIRNLA*
Ga0114903_115153213300009412Deep OceanPIDAVAIFDNEIFNQDIYISQRGDAASAVINYYIELEQIKLDLSENTVATLKDIRNLS*
Ga0114908_127020623300009418Deep OceanTDSSTIIFDTDVFNQDIHLTAVDASGNAKPINYYIELEQVKLDLNENTVATLRDIRNITG
Ga0114920_1018807633300009528Deep SubsurfaceEATYIASESVIFDQAVVNQDMFVTLTDTVGTEKCNYYIELEQVKLDLNEATVATLKDMRGTT*
Ga0114900_116416313300009602Deep OceanTTQQTMKEDSIIFDNQVFNQDIFITYNDLQGSDAKVNYYIELEQVKLDLGENTVATLKDIRNIEGQPLHAAP*
Ga0114900_119130713300009602Deep OceanIYNPSTSVVFDDRIFNQDIYITHKMVDETGLVNYYIELEQMKLDLSENTVATLKDIRNIQQPL*
Ga0114911_108625413300009603Deep OceanATDKVNVVFDNEIFNQDITITSVDNDGDTEAVNYYMELEQIKLDLNENTVATLKDIRNQA
Ga0114911_114611223300009603Deep OceanQPSVQTVIFDNETFNQDIFITYSDVRSNNSGSYYFELEQVKLSLDENTVATLKDIRNIESSKNK*
Ga0114901_110766123300009604Deep OceanAYPLSKAIIFDQEIFNQDIYVTWHDVKVDESINYYIELEQVKLDLNENTVATLKDIRNLS
Ga0114906_119910023300009605Deep OceanMTFNQDIYLTNSINGTAGREMNYYIELEQVRLDLNENTVATLKDIRNITTA*
Ga0114906_127170913300009605Deep OceanMKEDSIIFDNQVFNQDIFITYNDLQGSDAKVNYYIELEQVKLDLGENTVATLKDIRNIEGQPLHAAP*
Ga0151671_105934523300011253MarineVLFRSNQDIFVTHNDSAGLAKSCNYYIELEQIKLSLDENTVATLKDIRNIEAQ*
Ga0164320_1078130423300013098Marine SedimentVFDNEIFNQDIYITHTDIEGSAAVNYYIELEQVKLDLNENTVATLKDIRNLA*
Ga0181387_104654433300017709SeawaterNQNIYITHEDVHAGGRPCNYYIELEQMKLDLSEQTVATLKDIRNVGAE
Ga0181412_107237723300017714SeawaterNIIVFDNEIFNQDIYLTHDDTNNVGAVNYYIELEQVKLDLNENTVATLKDIRNIASQ
Ga0181390_107767313300017719SeawaterDIYVTHKDMATGEACNYYIELEQVKLDLNENTVATLKDIRNS
Ga0181388_102943613300017724SeawaterDLHIIFDNKIFNQDIYITHTDNESSYPINYYLELEQIKLDLNEATVATLKDMRGRE
Ga0181388_109818133300017724SeawaterIFDREIFNQDIYVTHDAGDAASVDCNYYIELEQVRLDTNENTVATLKDMRNITSKRKVTP
Ga0181419_117460123300017728SeawaterIFDNEIFNQDIYITAAVSSSADPTNYYIELEQVNLSLDENTVATLKDIRNIKGRXVNNIF
Ga0181396_104604723300017729SeawaterEIFNQDIYITHEDVHAGGRPCNYYIELEQMKLDLSEQTVTTLKDIRNTGTQ
Ga0181396_107372423300017729SeawaterVIFDNEIFNQDIYITHFDSKSALACNYYLELEQMKLDLNEQTVATLKDIRNIGAQ
Ga0181426_113305013300017733SeawaterTTVFDNEIFNQDIYVTHTTTDGSGAVNYYLELEQVKLDLNENTVATLKNIRNITG
Ga0181431_104301233300017735SeawaterIFDNMTFNQDIYVTMADTDTNTDPGNYYIELEQIKLDLNENTVATLKDIRNIKSQ
Ga0181431_114692123300017735SeawaterQGFNVPYSQVIIFDNRTFNQDIYVTHVNTVAAGLDTPANYHIELEQIKLDLNENTVATLKDIRNINAQ
Ga0181428_100666763300017738SeawaterDNKIFNQDIYITHTDNESSYPINYYLELEQVKLDLNEATVATLKDMRGRE
Ga0181418_114893213300017740SeawaterIIITFDNMTFNQDICITYFEDAGNKSANYYIELEQIKLDLSENTVATLKDIRNIASQ
Ga0181427_102699913300017745SeawaterPPQDSVIFDQEIFNQDIYVTHKDMATGEACNYYIELEQVKLDLNENTVATLKDIRNS
Ga0181427_105762833300017745SeawaterRDDTLLSAINTVVFDNEIFNQDIYVTHTTTDGSGAVNYYLELEQVKLDLNENTVATLKNIRNITG
Ga0181393_110793413300017748SeawaterIFDNEIFNQDIYITHEDVHAGGRPCNYYIELEQMKLDLSEQTVATLKDIRNVGAE
Ga0181393_112049123300017748SeawaterFNQDIYVTHKDMATGEACNYYIELEQVKLDLNENTVATLKDIRNS
Ga0181405_105837213300017750SeawaterQEIFNQDIYVTHKDMATGEACNYYIELEQVKLDLNENTVATLKDIRNS
Ga0187219_106689433300017751SeawaterPAIGQSVIFDNEIFNQDIYITHEDVHAGGRPCNYYIELEQMKLDLSEQTVTTLKDIRNTGTQ
Ga0181400_109974423300017752SeawaterFDQEIFNQDIYVTHKDMATGEACNYYIELEQVKLDLNENTVATLKDIRNS
Ga0181407_112894213300017753SeawaterTIIHDNMVFNQDIYLTSIDNSGGAAQDTNYYIELEQVSLALDENTVATLKDIRNITGQ
Ga0181407_115243423300017753SeawaterVIFDNEKFNQNIYITHEDVHAGGRPCNYYIELEQMKLDLSEQTVATLKDIRNVGAE
Ga0181420_101632053300017757SeawaterPAIGQSVIFDNEKFNQNIYITHEDVHAGGRPCNYYIELEQMKLDLSEQTVATLKDIRNVGAE
Ga0181420_104792653300017757SeawaterGVGWYGAVASNNSQSQTIFFDNEVFNQDIYVTHTDNASNQKINYYIELEQIKLDLNENTVVTLKDIRNLS
Ga0181420_111433013300017757SeawaterIFDREIFNQDIYVTHKDVAVGIGVNYYIELEMVKLDLNENTVATLKDIRNIEASDVEPVP
Ga0181420_121510413300017757SeawaterPLVIFDNMTFNQDIYVVAVMDSTEPNINYHIQLEQVKLDLNEATVATLKDMRGRE
Ga0181413_104883613300017765SeawaterTTVFDNEIFNQDIYVTHTTTDGSGAVNYYIELEQIRLDLNENTVATLKDIRNLS
Ga0181406_116875623300017767SeawaterTPAIGQSVIFDNEIFNQDIYITHEDVHAGGRPCNYYIELEQMKLDLSEQTVTTLKDIRNTGTQ
Ga0181430_106016713300017772SeawaterIVNQDIYVTNTTNGGGTAPLNYYIELEQIKLDLNENTVATLKDIRSLS
Ga0181430_115486913300017772SeawaterGTDTTIVFDNMTFNQDIYVTLVDNQSAVAGNYYIELEQIKLDLNENTTATLRNIRNIAE
Ga0181430_122212813300017772SeawaterFNQDIYVTAVELAGGRPTNYHIELEQVKLDLNEQTVATLKDIRNVGAE
Ga0181386_116238723300017773SeawaterDAYNYGISFATVFDNETFNQDISITYFNNKTNESAGFINYYIELEQIKLDLTENTVATLKDIRNIASQ
Ga0181432_104646733300017775SeawaterDNMVFNQDITLTHVELKATATVNYYLELEQVKLDLGENTVATLKDIRNLA
Ga0181432_105730643300017775SeawaterFDNMTVNQDIYITNFDTGTAGAINYYIELEQVKLDLNENTVATLKDIRNVTAPT
Ga0181432_110535013300017775SeawaterIYITHDAGAGQSGNCNYYLELEQVKLNLSENTVATLKDIRNVTAPV
Ga0181432_114260513300017775SeawaterLAGSQSSHSYPTSEIIVFDSMIFNQDIYVTLLNQDKGDQCNYYIELEQVRLDLNENTVATLKDIRNLS
Ga0181432_115220913300017775SeawaterFDSEIFNQDIYITNEDVSGNNAKVNYYIELEQVKLDLSENTVATLKDIRNETQPL
Ga0181432_126604013300017775SeawaterPSIVFDNVTFNQDIYITHIDEGGSGNINYHIELEQIKLDLNENTVATLKDIRNIARKTPT
Ga0181432_129601213300017775SeawaterVIFDNMTFNQDIYITAIDVNDSNAVNYYIELEQVKLDLGENTVATLKNIKNLEPGG
Ga0181432_131099423300017775SeawaterEVIIFESSTFNQDIFVTFKDVSTGQSMNYYIELEQMKLSKDEATVATLKDMRAGPSSI
Ga0181394_104068413300017776SeawaterNYVVHNDNQGSSSCNYYIELEQVKLDLNENTVATLKDIRNIASQ
Ga0181395_106003513300017779SeawaterIIFDNEIFNQDIYVTMNEGAGGATTCNYYIELEQVKLDLNENTVATLKDIRNS
Ga0181380_105013713300017782SeawaterQDIYVTHADVDGTQPVNYHLELETVKLDLTENSVATLKDIRNIIRD
Ga0181379_126523613300017783SeawaterPEDLHIIFDNKIFNQDIYITHTDNESSYPINYYLELEQVKLDLNEATVATLKDMRGRE
Ga0181424_1006769513300017786SeawaterIVFDNTTFNQDIYISYIESGSATTGINYHIELEQVKLDLNENTVATLKDIRNIASQ
Ga0211625_1038362523300020473MarineTVIFDNEIFNQDIFITHKDVSGNDPGAPINYYIELEQIKLDLNENTVATLKDIRNIESQXANNII
Ga0232641_124141623300021979Hydrothermal Vent FluidsMTFNQDIYVTHVEGIGTNACNYYIELEMIKLDLSENTVATLKDIRNIEAQYL
(restricted) Ga0255049_1021300513300024517SeawaterSTVFDGEVFNQDIEICHNDGHADSNPVNYYLELEQMPLDLNEATVATLKNIRNND
Ga0207889_101130123300025042MarineNFNSTDFGGTVIIFDQEIFNQDIFIMNVDGSGNGNALNYYIELEQVKLDTNANTVATLKDIRNLA
Ga0207906_102309513300025052MarineDKMVFNQDIYIMAKSDGSDKKINYYIELEQRTLDLNENTVATLKDIRNLA
Ga0207887_107239113300025069MarineVSDVVIFDQEVFNQDIYVTARATGSANDMNYYLELEQVKLDMGENTVATLKDIRNTKTQG
Ga0207887_108547323300025069MarineIIFDREIFNQDIYVTHVDTVGSQPCNYYIELEQIKLDLNENTVATLKDIRNVTGPKVTAV
Ga0208790_109600013300025118MarineQDIYVTHEDTVGSQPCNYYIELELIKLDLNENTVATLKDIRNIESQ
Ga0209644_106124423300025125MarineIVFDNEIFNQDIYITHTDIEGSAAVNYYIELEQVKLDLNENTVATLKDIRNLA
Ga0208919_119410833300025128MarineNMTFNQDIYITHADEGGTAPVNYYIELEQVKLDLNENTVATLKDIRNISA
Ga0208299_119418223300025133MarineQDVVVIFDNEIFNQDIYITHKNDSEAKAMNYYIEIEQIKLDLNENTVATLKDIRNIEQQ
Ga0208182_103015733300025251Deep OceanQQTIVFDNEVFNQDIYITNNDSIGSNAMNYYIELEQIKLDLSENTVATLKDIRNQEARFI
Ga0208030_102377013300025282Deep OceanTIVFDSTTFNQDIYITAKAESGTNINYYIELEQIKLDLTENTVATLKDIRNIEASSV
Ga0208030_111343723300025282Deep OceanETFNQDIYITNKDVSTGEDINYYLELEQVKLDLSENTVATLKDIRNSTQ
Ga0207903_105582123300025287Deep OceanMPMQIIFDREIFNQDIYITHVDNDASELCNYYIELEQVKLDLNDNTVATLKDIRNLEGRNDTA
Ga0208450_108817313300025301Deep OceanQDIYVTHADVVGTDPCNYYIELEQVKLDLNENTVTTLKNLRTIPH
Ga0208450_112899523300025301Deep OceanKILFDKEVFNQDIYIGCNDVQGNDGMNYYIELEQVKLDLNENTVATLKDIRNVSG
Ga0208684_115734213300025305Deep OceanGAVYYTQSSSGATNPEDSNVVFDTMVFNQDIFITHSNSEGSSGINYYIELEQVKLDINEATVATLKDMRGRE
Ga0207988_109912623300026206MarineDNMVFNQDIFITHKGISAGIGNPVNYYLELEQVKLDLGENTVATLKDIRNVTSPV
Ga0207989_103667613300026209MarineEIFNQDIYVTHEAITAGGACNYYIELEQVKLDLNENTVATLKDIRNIASQ
Ga0208407_115276333300026257MarineATLGPASTVVVFDNTTFNQDIYITHEDTGGSQPCNYYIELEQIKLDINENTVATLKDIRNIASQ
(restricted) Ga0255054_1023383933300027856SeawaterSTSEVIIFDNEIFNQDIYITFKDVSTGQPMNYYIELEQIKLDLNENTVATLKDIRNLA
(restricted) Ga0255054_1030387713300027856SeawaterFNQDIYVTHKNNANVPINYYFELEQFDLALDEQTVATLKDIRNIGAE
(restricted) Ga0255054_1063574113300027856SeawaterGSDDNAYSDGIIVVFDNEVFNQDIYITHSEVKLANECNYYIELEQVSLDLNENTVATLKDIRNVA
(restricted) Ga0255052_1038804933300027865SeawaterTSVIFDNMTFNQDITVTHVDTHSGGKCNYYIELEQRDLALDEATVATLKNIRNND
(restricted) Ga0255053_1028905623300027868SeawaterRDIVIFDGIIFNQDIYITHKDLTTGIACNYYLELEQVTLDLNENTVATLKDIRNIAGTV
(restricted) Ga0255055_1039826313300027881SeawaterFNQDIYLTQIDMDGTPTQGVNYHIELEQVRLDLNENTVATLKDIRNITG
Ga0302123_1005220113300031623MarineEWSTHNILVFDNEIFNQDIYITHFDASVGQAVNYYIELESLKLDTNETVMATLKDMRSTATLS
Ga0310345_1009514513300032278SeawaterFNQDIYITTKSQASGSCNYYIELEQVKLDINSNTVATLKDMRNTATPLP


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