Scaffold Ga0207984_1010426

Overview

Basic Information

• Taxon OID: 3300026202
• Scaffold ID: Ga0207984_1010426
• Source Dataset Name: Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201306PF43B (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3123
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (36.36%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Microbial And Viral Regulation Of Community Carbon Cycling Across Diverse Low-Oxygen Zones

Source Dataset Sampling Location

• Location Name: Pacific Ocean: Eastern Tropical North Pacific
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001081	Metagenome / Metatranscriptome	784	Y
F028834	Metagenome	190	Y
F087030	Metagenome / Metatranscriptome	110	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0207984_10104261	F028834	N/A	LLPLDNYPILTYIYIMKERKKHMIKIDIRAKNVAYITIGKWVIYVDNSTGEQIIDSWEE
Ga0207984_10104266	F087030	N/A	MLIVYICASIGGTCDTWVKETHFDDWDSCMRAGYTTSLDLIKEAGPEYVNKSRMYVKFRCREVPIREEKI
Ga0207984_10104269	F001081	N/A	MKELKIPKKHTEICDNCRGNGFIKVVNNNRQTNVHQCWICKSEGEIKNYDQAEVDDFIYDFYYRERLH