Scaffold Ga0209312_1024778

Overview

Basic Information

• Taxon OID: 3300026195
• Scaffold ID: Ga0209312_1024778
• Source Dataset Name: Anaerobic biogas reactor microbial communites from Washington, USA - Biogas_R1_B C13 SIP DNA (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2054
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Bioreactor → Anaerobic → Unclassified → Unclassified → Anaerobic Biogas Reactor → Anaerobic Biogas Reactor Microbial Communites From Washington, Usa

Source Dataset Sampling Location

• Location Name: Washington, USA
• Coordinates
  • Lat. (^o): 47.6525
  • Long. (^o): -122.3049

Associated Families

Family	Category	Number of Sequences	3D Structure?
F034940	Metagenome / Metatranscriptome	173	Y
F101100	Metagenome / Metatranscriptome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209312_10247782	F034940	GAGG	MGNDCWYYRAQYAGMTKVCMRKSIVERGRIVRFGLCPKPPDSEAWRRCGFAIGQHEIPLMVEK
Ga0209312_10247783	F101100	AGGAG	MKTVFRVESANEENIRGGWYLLADSLAAAREVYPAHLFPSMTFVEVGKGLCVECNRRAVDALVER
Ga0209312_10247785	F101100	GAGG	MKPVFRVESANDEIIRGGWYLMADSLAAAREVYPAHLFPSMTLIEVGKGLCVECNHRAVDALVENRGMD