NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208763_1000189

Scaffold Ga0208763_1000189


Overview

Basic Information
Taxon OID3300026136 Open in IMG/M
Scaffold IDGa0208763_1000189 Open in IMG/M
Source Dataset NameMarine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201306PF45B (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)13469
Total Scaffold Genes29 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (17.24%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Microbial And Viral Regulation Of Community Carbon Cycling Across Diverse Low-Oxygen Zones

Source Dataset Sampling Location
Location NamePacific Ocean: Eastern Tropical North Pacific
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F029763Metagenome / Metatranscriptome187Y
F093842Metagenome / Metatranscriptome106N
F093906Metagenome / Metatranscriptome106N

Sequences

Protein IDFamilyRBSSequence
Ga0208763_100018913F029763N/AMRTLVLFLLMTSFCYTQKPQPIPTELYGQWYNLDQELLTIQPNETFTRRNTKGILASGKLEIVEGELRVIRDDVEDEYSLLFYIGNTTLVITKPRSNKAWLFYRLGN
Ga0208763_10001896F093906N/AMMMFLNTNGREGTGNFNVDFDFTDKQIELLKKYGDFIIAIYYSEKNNKGKLKIQTVDYPE
Ga0208763_10001898F093842N/AMKLTILNFATGHIHIHNVSNQQEVMNHVDKHSDKTWMLSTNEEFKIINH
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