Scaffold Ga0208318_110904

Overview

Basic Information

• Taxon OID: 3300026098
• Scaffold ID: Ga0208318_110904
• Source Dataset Name: Marine viral communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling - metaG 3747_4435 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 652
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine Oceanic → Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Southern Atlantic ocean
• Coordinates
  • Lat. (^o): 8.2514
  • Long. (^o): -49.9993

Associated Families

Family	Category	Number of Sequences	3D Structure?
F052875	Metagenome	142	N
F092722	Metagenome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208318_1109042	F092722	AGGGGG	MYFVVADLPFPITFPANWTGVGVSANEAVSQPVQMPVKVVVYKTTK
Ga0208318_1109043	F052875	N/A	RVAMELAAVQQLVAAVGPIGAMVVIGAWWFVSHQEKRNGAKDQTARLKARDAIIQISADVGHMKKDIADIKADGKTTATTLMQHMAQQHTRGR