Scaffold Ga0209953_1001970

Overview

Basic Information

• Taxon OID: 3300026097
• Scaffold ID: Ga0209953_1001970
• Source Dataset Name: Salt pond water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG R2_restored_H2O_MG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5856
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (88.89%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Pond Water → Salt Pond Water, Soil And Salt Crust Microbial Communities From South San Francisco Under Conditions Of Wetland Restoration.

Source Dataset Sampling Location

• Location Name: South San Francisco, USA
• Coordinates
  • Lat. (^o): 37.4958
  • Long. (^o): -122.1331
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F021020	Metagenome / Metatranscriptome	221	Y
F034945	Metagenome / Metatranscriptome	173	Y
F042350	Metagenome / Metatranscriptome	158	Y
F062573	Metagenome / Metatranscriptome	130	Y
F090460	Metagenome / Metatranscriptome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209953_100197012	F042350	AGGA	MPGRESELLRGYIQGVAAMMNLITSDKVRALDKTNVLGYARELVEAKREEETNVPR
Ga0209953_100197015	F062573	GGAGG	MVKQLKEYEILDITAYTVHAFDEEHALRKFGRYDYVEEGDTWPQARELGPVNMSGTGPDGIEVYMPS
Ga0209953_10019704	F021020	AGGAG	MSDVINLRNTVMVNNYDLNIWDKVGYETEYEEEGWAIEVYQYDYKGSPYGSGKHVPEHTITLTPTESKRLTLGWGPDLGGDYTSDADFWLDKDTFLETYTDIPERVFNLLWALPDYEQSLDLDPSVAV
Ga0209953_10019705	F034945	GGAGG	MGDRANVGIRGTDGNTIFLYLHWGGEDRHGIVANAIAHAMAREGYDEAYFTRIFISRVIDKDWDKETGVGLSVNKLSASGDGYDVPIYNYTTKKIELHEEKWDKAGGFVKYTDIEYPRDMYLSEFGIRGVNSYV
Ga0209953_10019708	F090460	GGGGG	MVNDKFSDKEYWEGIRDACEYFKDELGFEDATYTSLYQQATEELALV