Scaffold Ga0207648_10030212

Overview

Basic Information

• Taxon OID: 3300026089
• Scaffold ID: Ga0207648_10030212
• Source Dataset Name: Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4801
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (81.82%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan, Kellogg Biological Station
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000566	Metagenome / Metatranscriptome	1020	Y
F005427	Metagenome	401	Y
F081791	Metagenome / Metatranscriptome	114	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207648_100302121	F081791	AGGAGG	MTYFKVRLEIWCDGNPAESDLEETARHILAGEAICTSREVVAVVDRPQDIENDAAM
Ga0207648_1003021210	F005427	GGAG	MHTDTEIQPSVGSLTTDIQGQIRRLAAKMQRWITSLVRKAKKAMVFDRSAHWIHDTIPPTAVLAGAAAFGFWWDSVSAGLFACFALFFLAGIYKGLRQLVATLRWEHDRIIAANSNWNTSGTVERSERNFEVGAKAIEHLRPWVEDETALTEESAKAYCSVLLDTLATLHPKFTE
Ga0207648_100302126	F000566	GAGG	MKRFSLLAISLLMVLAISALAAPKPDTANVPAFPGTLANARYVYVASYDGDQFNPNLLPEDRAAIGAVQDAIQNWGKLTLVYEPQHADIIILVTSRPSEDVMAVYDGHGGPMGNYLWRVMGRDGLASGETPLVTQFEQGFESVQTHK