Scaffold Ga0208880_1000023

Overview

Basic Information

• Taxon OID: 3300026085
• Scaffold ID: Ga0208880_1000023
• Source Dataset Name: Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S23_td_SurfaceB_ad_5m_LV_B (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 28735
• Total Scaffold Genes: 57
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (19.30%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Southern Atlantic ocean
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000352	Metagenome / Metatranscriptome	1247	Y
F018717	Metagenome / Metatranscriptome	233	Y
F064812	Metagenome / Metatranscriptome	128	N
F069991	Metagenome	123	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208880_100002320	F064812	N/A	MKTITLTQSDYTNITKAFFYYLENEKALNLTQTEIDSILKTNNKIQ
Ga0208880_100002325	F000352	N/A	MRTIELTESDAIFVHYALRMYAMNTEGLDEQDKKEIREVAAKFK
Ga0208880_100002334	F069991	AGG	MSKEEILMQKIWVVAMHRATKSEHSYVVGVYDDLKNAKKAAIIEEHNRAGKYDAHINSYALNELPEEIIDDEI
Ga0208880_100002346	F018717	N/A	MKITVEHYDEKASIETDHDDVTFDEFMELVRKVAHGVGYHSELIEEWFNYEA