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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Family ID | F064812 |
| Family Type | Metagenome / Metatranscriptome |
| Number of Sequences | 128 |
| Average Sequence Length | 47 residues |
| Representative Sequence | MKTITLTQSDYTNITKAFFYYLENEKALNLTQKEIDSILETNSKIQ |
| Number of Associated Samples | 107 |
| Number of Associated Scaffolds | 128 |
| Quality Assessment | |
|---|---|
| Transcriptomic Evidence | Yes |
| Most common taxonomic group | Unclassified |
| % of genes with valid RBS motifs | 0.00 % |
| % of genes near scaffold ends (potentially truncated) | 21.88 % |
| % of genes from short scaffolds (< 2000 bps) | 78.12 % |
| Associated GOLD sequencing projects | 97 |
| AlphaFold2 3D model prediction | No |
| Hidden Markov Model |
|---|
| Powered by Skylign |
| Most Common Taxonomy | |
|---|---|
| Group | Unclassified (68.750 % of family members) |
| NCBI Taxonomy ID | N/A |
| Taxonomy | N/A |
| Most Common Ecosystem | |
|---|---|
| GOLD Ecosystem | Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine (17.969 % of family members) |
| Environment Ontology (ENVO) | Unclassified (68.750 % of family members) |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Saline → Water (saline) (82.031 % of family members) |
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| Predicted Topology & Secondary Structure | |||||
|---|---|---|---|---|---|
| Classification: | Globular | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 73.91% β-sheet: 0.00% Coil/Unstructured: 26.09% | Feature Viewer |
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| Powered by Feature Viewer | |||||
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| Pfam ID | Name | % Frequency in 128 Family Scaffolds |
|---|---|---|
| PF00118 | Cpn60_TCP1 | 2.34 |
| PF14743 | DNA_ligase_OB_2 | 2.34 |
| PF13884 | Peptidase_S74 | 1.56 |
| PF00166 | Cpn10 | 1.56 |
| PF08291 | Peptidase_M15_3 | 0.78 |
| PF04488 | Gly_transf_sug | 0.78 |
| PF01068 | DNA_ligase_A_M | 0.78 |
| PF02151 | UVR | 0.78 |
| PF02867 | Ribonuc_red_lgC | 0.78 |
| PF08299 | Bac_DnaA_C | 0.78 |
| COG ID | Name | Functional Category | % Frequency in 128 Family Scaffolds |
|---|---|---|---|
| COG0459 | Chaperonin GroEL (HSP60 family) | Posttranslational modification, protein turnover, chaperones [O] | 2.34 |
| COG0234 | Co-chaperonin GroES (HSP10) | Posttranslational modification, protein turnover, chaperones [O] | 1.56 |
| COG0209 | Ribonucleotide reductase alpha subunit | Nucleotide transport and metabolism [F] | 0.78 |
| COG0593 | Chromosomal replication initiation ATPase DnaA | Replication, recombination and repair [L] | 0.78 |
| COG1423 | ATP-dependent RNA circularization protein, DNA/RNA ligase (PAB1020) family | Replication, recombination and repair [L] | 0.78 |
| COG1793 | ATP-dependent DNA ligase | Replication, recombination and repair [L] | 0.78 |
| COG3774 | Mannosyltransferase OCH1 or related enzyme | Cell wall/membrane/envelope biogenesis [M] | 0.78 |
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| Name | Rank | Taxonomy | Distribution |
| Unclassified | root | N/A | 68.75 % |
| All Organisms | root | All Organisms | 31.25 % |
| Visualization |
|---|
| Powered by ApexCharts |
Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).
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| Habitat | Taxonomy | Distribution |
| Marine | Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine | 17.97% |
| Aqueous | Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous | 10.94% |
| Pelagic Marine | Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine | 9.38% |
| Seawater | Environmental → Aquatic → Marine → Inlet → Unclassified → Seawater | 7.81% |
| Estuarine Water | Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water | 6.25% |
| Marine | Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine | 5.47% |
| Seawater | Environmental → Aquatic → Marine → Strait → Unclassified → Seawater | 5.47% |
| Seawater | Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater | 4.69% |
| Marine | Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine | 3.91% |
| Estuarine | Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine | 3.12% |
| Salt Marsh | Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh | 3.12% |
| Pond Water | Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Pond Water | 3.12% |
| Marine Sediment | Environmental → Aquatic → Marine → Coastal → Sediment → Marine Sediment | 2.34% |
| Seawater | Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater | 1.56% |
| Estuarine | Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine | 1.56% |
| Pelagic Marine | Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine | 1.56% |
| Marine | Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine | 1.56% |
| Saline Water And Sediment | Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Epilimnion → Saline Water And Sediment | 1.56% |
| Seawater | Environmental → Aquatic → Marine → Oceanic → Unclassified → Seawater | 0.78% |
| Marine | Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine | 0.78% |
| Marine Water | Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine Water | 0.78% |
| Marine | Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine | 0.78% |
| Seawater | Environmental → Aquatic → Marine → Oceanic → Photic Zone → Seawater | 0.78% |
| Marine | Environmental → Aquatic → Marine → Coastal → Unclassified → Marine | 0.78% |
| Seawater | Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater | 0.78% |
| Marine Estuarine | Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Marine Estuarine | 0.78% |
| Marine | Environmental → Aquatic → Marine → Intertidal Zone → Sediment → Marine | 0.78% |
| Sediment | Environmental → Aquatic → Marine → Sediment → Unclassified → Sediment | 0.78% |
| Soil | Environmental → Terrestrial → Soil → Clay → Unclassified → Soil | 0.78% |
| Visualization |
|---|
| Powered by ApexCharts |
Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).
| Taxon OID | Sample Name | Habitat Type | IMG/M Link |
|---|---|---|---|
| 2189573025 | Marine microbial communities from Columbia River, CM, sample from Newport Hydroline, GS310-FOS-0p8-Hyp-75m | Environmental | Open in IMG/M |
| 3300000101 | Marine microbial communities from Delaware Coast, sample from Delaware MO Early Summer May 2010 | Environmental | Open in IMG/M |
| 3300000116 | Marine microbial communities from Delaware Coast, sample from Delaware MO Spring March 2010 | Environmental | Open in IMG/M |
| 3300000118 | Marine microbial communities from chronically polluted sediments in Tierra del Fuego - site OR sample ARG 06_12.3m | Environmental | Open in IMG/M |
| 3300001348 | Pelagic Microbial community sample from North Sea - COGITO 998_met_04 | Environmental | Open in IMG/M |
| 3300001352 | Pelagic Microbial community sample from North Sea - COGITO 998_met_07 | Environmental | Open in IMG/M |
| 3300003346 | Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_74LU_5_DNA | Environmental | Open in IMG/M |
| 3300003580 | Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - Saanich Inlet SI074_LV_120m_DNA | Environmental | Open in IMG/M |
| 3300003620 | Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI037_S3LV_125m_DNA | Environmental | Open in IMG/M |
| 3300005057 | Marine water microbial communities from the East Sea, Korea with extracellular vesicles - East-Sea-0.2um | Environmental | Open in IMG/M |
| 3300005239 | Environmental Genome Shotgun Sequencing: Ocean Microbial Populations from the Gulf of Maine | Environmental | Open in IMG/M |
| 3300005512 | Saline surface water microbial communities from Etoliko Lagoon, Greece - halocline_water | Environmental | Open in IMG/M |
| 3300005588 | Marine sediment microbial communities from the Atlantic coast under amendment with organic carbon and nitrate - tdDd47.1 | Environmental | Open in IMG/M |
| 3300005590 | Marine sediment microbial communities from the Atlantic coast under amendment with organic carbon and nitrate - tdAd47.2 | Environmental | Open in IMG/M |
| 3300005612 | Marine sediment microbial communities from the Atlantic coast under amendment with organic carbon and nitrate - tdAd00.2 | Environmental | Open in IMG/M |
| 3300005934 | Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S23_td_SurfaceB_ad_5m_LV_B | Environmental | Open in IMG/M |
| 3300006026 | Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_29_D_<0.8_DNA | Environmental | Open in IMG/M |
| 3300006305 | Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT229_1_0025m | Environmental | Open in IMG/M |
| 3300006484 | Estuarine microbial communities from the Columbia River estuary, USA - metaG S.535 | Environmental | Open in IMG/M |
| 3300006735 | Marine viral communities from the Subarctic Pacific Ocean - 5B_ETSP_OMZ_AT15132_CsCl metaG | Environmental | Open in IMG/M |
| 3300006749 | Marine viral communities from the Subarctic Pacific Ocean - 9_ETSP_OMZ_AT15188 metaG | Environmental | Open in IMG/M |
| 3300006750 | Marine viral communities from the Subarctic Pacific Ocean - 19_ETSP_OMZ_AT15317 metaG | Environmental | Open in IMG/M |
| 3300006789 | Marine viral communities from the Subarctic Pacific Ocean - 16_ETSP_OMZ_AT15313 metaG | Environmental | Open in IMG/M |
| 3300006793 | Marine viral communities from the Subarctic Pacific Ocean - 17_ETSP_OMZ_AT15314 metaG | Environmental | Open in IMG/M |
| 3300006802 | Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_18 | Environmental | Open in IMG/M |
| 3300006916 | Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_24 | Environmental | Open in IMG/M |
| 3300006919 | Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_21 | Environmental | Open in IMG/M |
| 3300006925 | Marine viral communities from the Subarctic Pacific Ocean - 14_ETSP_OMZ_AT15311 metaG | Environmental | Open in IMG/M |
| 3300006928 | Marine viral communities from the Subarctic Pacific Ocean - 8_ETSP_OMZ_AT15162 metaG | Environmental | Open in IMG/M |
| 3300007276 | Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_31 | Environmental | Open in IMG/M |
| 3300007538 | Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_2 Viral MetaG | Environmental | Open in IMG/M |
| 3300007539 | Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1M Viral MetaG | Environmental | Open in IMG/M |
| 3300007540 | Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_2 Viral MetaG | Environmental | Open in IMG/M |
| 3300007542 | Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_1 Viral MetaG | Environmental | Open in IMG/M |
| 3300007555 | Estuarine microbial communities from the Columbia River estuary - Ebb tide non-ETM metaG S.555 | Environmental | Open in IMG/M |
| 3300007655 | Estuarine microbial communities from the Columbia River estuary - High salinity metaG S.579 | Environmental | Open in IMG/M |
| 3300008012 | Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_29_N_<0.8_DNA | Environmental | Open in IMG/M |
| 3300009000 | Salt pond water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG SF2_B_H2O_MG | Environmental | Open in IMG/M |
| 3300009001 | Salt pond water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG SF2_C_H2O_MG | Environmental | Open in IMG/M |
| 3300009026 | Estuarine microbial communities from the Columbia River estuary - Freshwater metaG S.575 | Environmental | Open in IMG/M |
| 3300009027 | Salt pond water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG SF2_A_H2O_MG | Environmental | Open in IMG/M |
| 3300009071 | Pelagic marine microbial communities from North Sea - COGITO_mtgs_120405 | Environmental | Open in IMG/M |
| 3300009074 | Pelagic marine microbial communities from North Sea - COGITO_mtgs_100430 | Environmental | Open in IMG/M |
| 3300009076 | Pelagic marine microbial communities from North Sea - COGITO_mtgs_100511 | Environmental | Open in IMG/M |
| 3300009423 | Pelagic marine microbial communities from North Sea - COGITO_mtgs_100423 | Environmental | Open in IMG/M |
| 3300009440 | Pelagic marine microbial communities from North Sea - COGITO_mtgs_110512 | Environmental | Open in IMG/M |
| 3300009442 | Pelagic marine microbial communities from North Sea - COGITO_mtgs_110519 | Environmental | Open in IMG/M |
| 3300009467 | Pelagic marine microbial communities from North Sea - COGITO_mtgs_110530 | Environmental | Open in IMG/M |
| 3300009497 | Pelagic marine microbial communities from North Sea - COGITO_mtgs_120503 | Environmental | Open in IMG/M |
| 3300009507 | Pelagic marine microbial communities from North Sea - COGITO_mtgs_120607 | Environmental | Open in IMG/M |
| 3300009790 | Marine eukaryotic phytoplankton communities from Atlantic Ocean - Tropical Atlantic ANT10 Metagenome | Environmental | Open in IMG/M |
| 3300010148 | Marine viral communities from the Subarctic Pacific Ocean - 9B_ETSP_OMZ_AT15188_CsCl metaG | Environmental | Open in IMG/M |
| 3300010150 | Marine viral communities from the Subarctic Pacific Ocean - 17B_ETSP_OMZ_AT15314_CsCl metaG | Environmental | Open in IMG/M |
| 3300011258 | Seawater microbial communities from Japan Sea near Toyama Prefecture, Japan - 2015_1, permeate | Environmental | Open in IMG/M |
| 3300012919 | Marine microbial communities from the Central Pacific Ocean - Fk160115 60m metaG | Environmental | Open in IMG/M |
| 3300012952 | Marine eukaryotic phytoplankton communities from the Atlantic Ocean - Atlantic ANT 4 Metagenome | Environmental | Open in IMG/M |
| 3300017714 | Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 35 SPOT_SRF_2012-08-15 | Environmental | Open in IMG/M |
| 3300017720 | Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 6 SPOT_SRF_2009-12-23 | Environmental | Open in IMG/M |
| 3300017727 | Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 24 SPOT_SRF_2011-07-20 | Environmental | Open in IMG/M |
| 3300017751 | Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 13 SPOT_SRF_2010-07-21 (version 2) | Environmental | Open in IMG/M |
| 3300017773 | Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 9 SPOT_SRF_2010-03-24 | Environmental | Open in IMG/M |
| 3300017786 | Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 47 SPOT_SRF_2013-09-18 | Environmental | Open in IMG/M |
| 3300017824 | Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011501BT metaG (megahit assembly) | Environmental | Open in IMG/M |
| 3300017951 | Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101413BT metaG (megahit assembly) | Environmental | Open in IMG/M |
| 3300019214 | Estuarine microbial communities from the Columbia River estuary - R.1189 metaT (Metagenome Metatranscriptome) | Environmental | Open in IMG/M |
| 3300020055 | Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101411CT metaG (spades assembly) | Environmental | Open in IMG/M |
| 3300020165 | Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160331_1 | Environmental | Open in IMG/M |
| 3300020166 | Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160426_1 | Environmental | Open in IMG/M |
| 3300020187 | Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160512_1 | Environmental | Open in IMG/M |
| 3300020336 | Marine microbial communities from Tara Oceans - TARA_E500000081 (ERX289008-ERR315860) | Environmental | Open in IMG/M |
| 3300020348 | Marine microbial communities from Tara Oceans - TARA_B100000676 (ERX556089-ERR599161) | Environmental | Open in IMG/M |
| 3300020445 | Marine microbial communities from Tara Oceans - TARA_B100001996 (ERX555961-ERR599087) | Environmental | Open in IMG/M |
| 3300020470 | Marine microbial communities from Tara Oceans - TARA_B100000287 (ERX555976-ERR599053) | Environmental | Open in IMG/M |
| 3300021373 | Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO282 | Environmental | Open in IMG/M |
| 3300021957 | Estuarine water microbial communities from San Francisco Bay, California, United States - C33_18D | Environmental | Open in IMG/M |
| 3300021958 | Estuarine water microbial communities from San Francisco Bay, California, United States - C33_27D | Environmental | Open in IMG/M |
| 3300021960 | Estuarine water microbial communities from San Francisco Bay, California, United States - C33_9D | Environmental | Open in IMG/M |
| 3300021964 | Estuarine water microbial communities from San Francisco Bay, California, United States - C33_34D | Environmental | Open in IMG/M |
| 3300022187 | Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Sep_01 (v3) | Environmental | Open in IMG/M |
| 3300022413 | Sediment microbial communities from San Francisco Bay, California, United States - SF_Jan12_sed_USGS_21 | Environmental | Open in IMG/M |
| 3300022929 | Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011512CT metaG | Environmental | Open in IMG/M |
| 3300023089 (restricted) | Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Na_oxic_11_MG | Environmental | Open in IMG/M |
| 3300023109 (restricted) | Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_122_August2016_10_MG | Environmental | Open in IMG/M |
| 3300023210 (restricted) | Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Na_anoxic_4_MG | Environmental | Open in IMG/M |
| 3300024264 (restricted) | Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_124_October2016_10_MG | Environmental | Open in IMG/M |
| 3300024346 | Whole water sample coassembly | Environmental | Open in IMG/M |
| 3300025084 | Marine viral communities from the Subarctic Pacific Ocean - 14B_ETSP_OMZ_AT15311_CsCl metaG (SPAdes) | Environmental | Open in IMG/M |
| 3300025085 | Marine viral communities from the Subarctic Pacific Ocean - 14_ETSP_OMZ_AT15311 metaG (SPAdes) | Environmental | Open in IMG/M |
| 3300025086 | Marine viral communities from the Subarctic Pacific Ocean - 5_ETSP_OMZ_AT15132 metaG (SPAdes) | Environmental | Open in IMG/M |
| 3300025101 | Marine viral communities from the Subarctic Pacific Ocean - 9_ETSP_OMZ_AT15188 metaG (SPAdes) | Environmental | Open in IMG/M |
| 3300025103 | Marine viral communities from the Subarctic Pacific Ocean - 16_ETSP_OMZ_AT15313 metaG (SPAdes) | Environmental | Open in IMG/M |
| 3300025108 | Marine viral communities from the Subarctic Pacific Ocean - 17_ETSP_OMZ_AT15314 metaG (SPAdes) | Environmental | Open in IMG/M |
| 3300025674 | Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1M Viral MetaG (SPAdes) | Environmental | Open in IMG/M |
| 3300025684 | Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_74LU_5_DNA (SPAdes) | Environmental | Open in IMG/M |
| 3300025695 | Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_116LU_22_DNA (SPAdes) | Environmental | Open in IMG/M |
| 3300025699 | Pelagic marine microbial communities from North Sea - COGITO_mtgs_120503 (SPAdes) | Environmental | Open in IMG/M |
| 3300025832 | Pelagic marine microbial communities from North Sea - COGITO_mtgs_110530 (SPAdes) | Environmental | Open in IMG/M |
| 3300026085 | Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S23_td_SurfaceB_ad_5m_LV_B (SPAdes) | Environmental | Open in IMG/M |
| 3300026138 | Salt pond water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG SF2_A_H2O_MG (SPAdes) | Environmental | Open in IMG/M |
| 3300027861 (restricted) | Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Na_anoxic_12_MG | Environmental | Open in IMG/M |
| 3300027906 | Marine eukaryotic phytoplankton communities from Atlantic Ocean - Tropical Atlantic ANT8 Metagenome (SPAdes) | Environmental | Open in IMG/M |
| 3300028045 (restricted) | Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Na_anoxic_10_MG | Environmental | Open in IMG/M |
| 3300029448 | Marine viral communities collected during Tara Oceans survey from station TARA_023 - TARA_E500000082 | Environmental | Open in IMG/M |
| 3300029787 | Marine viral communities collected during Tara Oceans survey from station TARA_018 - TARA_A100000172 | Environmental | Open in IMG/M |
| 3300031539 | Soil microbial communities from Risofladan, Vaasa, Finland - UN-3 | Environmental | Open in IMG/M |
| 3300031773 | Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 100m 34915 | Environmental | Open in IMG/M |
| 3300031775 | Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 80m 32315 | Environmental | Open in IMG/M |
| Geographical Distribution | |
|---|---|
| Zoom: | Powered by OpenStreetMap |
| ⦗Top⦘ |
Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).
| Protein ID | Sample Taxon ID | Habitat | Sequence |
| GS310G0146KB_00375610 | 2189573025 | Marine Estuarine | MSLQKQITLNQNDYNNITKAFFFYLENEKDLNLTQNEINSILQTNSKIQ |
| DelMOSum2010_100495587 | 3300000101 | Marine | MSNTKTITLNQNDXYNITNAIMFYLENEKDLNLTQNEINSILNTNSKIQ* |
| DelMOSpr2010_100082951 | 3300000116 | Marine | MSKTITLTQSDYTNITNAFFFYLENEKFLNLSQKEIDSILDTNSKIQ* |
| TDF_OR_ARG05_123mDRAFT_10119452 | 3300000118 | Marine | MKTITLTQNDYTNITKAFFYYLENEKELNLSQQEIESIFETNNKIQ* |
| JGI20154J14316_101782571 | 3300001348 | Pelagic Marine | MSTTKTITLNQNDYYNITNAIMFYLENEKDLNLNQNEIDSILQTNSKIQ* |
| JGI20157J14317_101355823 | 3300001352 | Pelagic Marine | MSNTKTITLTQNDYNNITKAFFFYLENEKDLNLNQNEINSILNTNSKIQ* |
| JGI26081J50195_100029728 | 3300003346 | Marine | MPNTKTITLNQNDYNNITNALFYYLQNEKLLNLTQNEIDSILKTNNKIQ* |
| JGI26260J51721_10695031 | 3300003580 | Marine | MSITKTITLNQNDYNNITKSFFFYLENEKDLNLTQNEINSILQTNSKIQ* |
| JGI26273J51734_100298589 | 3300003620 | Marine | MTKTITLTQNDYTNITKAFFFYLENEKSLNLSQKEIDSILDTNSKIQ* |
| Ga0068511_10551913 | 3300005057 | Marine Water | MSKTITLTQSDYTNITKAFFFYLENEKFLNLSQKEIDSILETNSKIQ* |
| Ga0073579_11032162 | 3300005239 | Marine | MKTITLTQSDYTNISKAFFYYLENEKALNLTQTEIDSILETNNKIQ* |
| Ga0074648_11084922 | 3300005512 | Saline Water And Sediment | MKTITLTQSDYNNITAAFFYYLENEKALNLTQQEIDSILETNNKIQ* |
| Ga0074648_11125153 | 3300005512 | Saline Water And Sediment | MKTITLTQSDYTNITKAFFYYLENEKALNLTQQEIDSILKTNNKIQ* |
| Ga0070728_105865812 | 3300005588 | Marine Sediment | MSNTKTITLNQNDYYNITNAIMFYLENEKDLNLTQNEINSILNTNSKIQ* |
| Ga0070727_105361742 | 3300005590 | Marine Sediment | QNDYYNITNAIMFYLENEKDLNLTQNEINSILNTNSKIQ* |
| Ga0070723_102232861 | 3300005612 | Marine Sediment | YNITNAIMFYLENEKDLNLTQNEINSILNTNSKIQ* |
| Ga0066377_100554683 | 3300005934 | Marine | MKTITLTQSDYTNITKAFFYYLENEKALNLTQTEIDSILKTNNKIQ* |
| Ga0075478_102192662 | 3300006026 | Aqueous | MSKTITLTQNDYTNITKAFFFYLENEKFLNLSQKEIDSILDTNSKIQ* |
| Ga0068468_10150474 | 3300006305 | Marine | MKTITLTQSDYTNITKAFFFYLENEKELNLTKKDIDSILKTNNKIQ* |
| Ga0070744_100126457 | 3300006484 | Estuarine | MSITKTITLNQNDYNNITKAFFFYLENEKDLNLTQNEINSILQTNSKIQ* |
| Ga0098038_10066786 | 3300006735 | Marine | MSKTITLTQNDYTNITKAFFFYLENEKFLNLNQKEIDSILDTNSKIQ* |
| Ga0098042_10516783 | 3300006749 | Marine | TLTQSDYTNITNAFFFYLENEKFLNLNQKEIDSILDTNSKIQ* |
| Ga0098058_11528381 | 3300006750 | Marine | MSTKTITLNQNDYYNITNAIMFYLENEKDLNLTQTEINSILNTNSKIQ* |
| Ga0098054_10899723 | 3300006789 | Marine | MSITKTITLNQNDYYNISNAIMFYLENEKDLNLNQNEIDSILQTNSKIQ* |
| Ga0098055_12967072 | 3300006793 | Marine | NIYESKIYKMSITKTITLNQNDYYNISNAIMFYLENEKDLNLTQTEIDSILNTNSKIQ* |
| Ga0098055_13975062 | 3300006793 | Marine | NIYESKIYKMSITKTITLNQNDYYNISNAIMFYLENEKDLNLNQNEIDSILQTNSKIQ* |
| Ga0070749_103237653 | 3300006802 | Aqueous | LDNINVKQKQMKTITLTQTDYNNITKAFFFYLENEKQLNLTKKEIESILKTNNKIQ* |
| Ga0070750_101950662 | 3300006916 | Aqueous | MKTITLTQTDYNNITKAFFFYLENEKQLNLTKKEIESILKTNNKIQ* |
| Ga0070750_103687592 | 3300006916 | Aqueous | MSKTITLTQNDYTNITKAFFFYLENEKFLNLSQKEIDSILDTNSK |
| Ga0070746_104513382 | 3300006919 | Aqueous | MKTITLTQQDYTNITNAFFYYLENEKALNLTQTEINSILETNNKIQ* |
| Ga0098050_10031058 | 3300006925 | Marine | MSITKTITLNQNDYYNISNAIMFYLENEKDLNLTQTEIDSILNTNSKIQ* |
| Ga0098041_100010541 | 3300006928 | Marine | VKIIKLTQSDYNNITKAFFYYLENEKKLNLTQKEIDSILKTNNKIQ* |
| Ga0098041_10700364 | 3300006928 | Marine | MKSIILNQTDYNNITKSFFFYLENEKELNLNKKEINSILKTNNKIQ* |
| Ga0070747_12659782 | 3300007276 | Aqueous | MSKTITLTQNDYNNITKAFFFYLENEKDLNLNQNEIKSILKTNSKIQ* |
| Ga0099851_10129373 | 3300007538 | Aqueous | MKTIQLTQTDYNNITKAFFFYLENEKQLNLTKKEIESILKTNNKIQ* |
| Ga0099849_11479621 | 3300007539 | Aqueous | MSKTITLTQSDYTNITNAFFFYLENEKFLNLSQKEIDSILDTNSK |
| Ga0099849_12614592 | 3300007539 | Aqueous | MKTITLTQSDYTNITKAFFYYLENEKALNLTQKEIDSILETNNKIQ* |
| Ga0099847_11041402 | 3300007540 | Aqueous | MKTITLTQSDYTNITNAFFYYLENEKALNLTQTEIDSILETNSKIQ* |
| Ga0099846_12231511 | 3300007542 | Aqueous | MKTITLTQQDYTNITNAFFYYLENEKALNLTQKEIDSILETNSKIQ* |
| Ga0102817_10071471 | 3300007555 | Estuarine | MTKTITLTQSDYTNITKAFFFYLENEKSLNLSQKEIDSILDTNSKIQ* |
| Ga0102825_10049561 | 3300007655 | Estuarine | MTKTITLTQSDYTNITKAFFFYLENEKSLNLSQKEIDSIL |
| Ga0075480_105579293 | 3300008012 | Aqueous | MKTITLTQNDYNNITKAFFFYLENEKQLNLTKKEIESILKTNNKIQ* |
| Ga0102960_12377342 | 3300009000 | Pond Water | MKTITLTQTDYTNITKAFFYYLENEKALNLTQTEIDSILETNNKIQ* |
| Ga0102963_10554355 | 3300009001 | Pond Water | MKTITLTQNDYTNITKAFFYYLENEKALNLTQKEIDSILETNNKIQ* |
| Ga0102829_10012568 | 3300009026 | Estuarine | MTKTITLTQSDYTNITKAFFFYLENEKSLNLSQKEIDSILDTN |
| Ga0102957_13276382 | 3300009027 | Pond Water | MKSITLTQSDYTNITKAFFYYLENEKALNLTQTEIDSIIE |
| Ga0115566_106417451 | 3300009071 | Pelagic Marine | DYYNITNAIMFYLENEKDLNLTQNEINSILNTNSKIQ* |
| Ga0115549_11681461 | 3300009074 | Pelagic Marine | MSNTKTITLNQNDYYNITNAIMFYLENETQLNLNQNEINSILQTNSKIQ* |
| Ga0115550_10957593 | 3300009076 | Pelagic Marine | MSNTKTITLTQNDYNNITKAFFFYLENEKDLNLNQNEIKSILKTNSKIQ* |
| Ga0115550_11950942 | 3300009076 | Pelagic Marine | MSKTKTITLTQNDYNNITKAFFFYLENEKDLNLNQNEIKSILKTNSKIQ* |
| Ga0115548_10688031 | 3300009423 | Pelagic Marine | TKTITLNQNDYYNITNAIMFYLENEKDLNLTQNEINSILNTNSKIQ* |
| Ga0115561_13532831 | 3300009440 | Pelagic Marine | MSNTKTITLNQNDYYNITNAIMFYLENEKDLNLTQNEINSILNTN |
| Ga0115563_12456651 | 3300009442 | Pelagic Marine | TLNQNDYYNITNAIMFYLENEKDLNLTQNEINSILNTNSKIQ* |
| Ga0115565_102069312 | 3300009467 | Pelagic Marine | MSNTKTITLTQNDYNNITKAFFFYLENEKDLNLNQNEIKSILNTNSKIQ* |
| Ga0115569_105119092 | 3300009497 | Pelagic Marine | IYKMSKTKTITLTQNDYNNITKAFFFYLENEKDLNLNQNEIKSILKTNSKIQ* |
| Ga0115572_101374951 | 3300009507 | Pelagic Marine | MSNKKTITLTQNDYNNITKAFFFYLENEKDLNLNQNEIKSILKT |
| Ga0115012_102067983 | 3300009790 | Marine | VKIIKLTQSDYNNITKAFFFYLENEKELNLTEKEIDSILKTNNKIQ* |
| Ga0115012_103257004 | 3300009790 | Marine | MKTITLTQSDYTNITKAFFFYLENEKYLNLTKKEIDSILKTNNKIQ* |
| Ga0098043_10034681 | 3300010148 | Marine | MSKTITLTQSDYTNITKAFFFYLENEKFLNLNQKEIDSILDTNSKIQ* |
| Ga0098056_13217161 | 3300010150 | Marine | NDYYNISNAIMFYLENEKDLNLNQNEIDSILQTNSKIQ* |
| Ga0151677_10419633 | 3300011258 | Marine | MKTITLTQNDYTNITKAFFFYLENEKELNLSQQEIESIFETNNKIQ* |
| Ga0160422_101905181 | 3300012919 | Seawater | MKTITLTQSDYTNITKAFFFYLENEKELNLTKKEIDSILKTNNKIQ* |
| Ga0163180_118642921 | 3300012952 | Seawater | MKTITLTQSDYTNITKAFFFYLENEKQLNLTKKDIDSILKTNNKIQ* |
| Ga0181412_100655112 | 3300017714 | Seawater | MKTITLTQSDYNNITAAFFYYLENEKALNLTQTEINSILETNSKIQ |
| Ga0181412_10967692 | 3300017714 | Seawater | MSKTITLTQSDYTNITKAFFFYLENEKSLNLSQKEIDSILDTNSKIQ |
| Ga0181383_10454754 | 3300017720 | Seawater | MKSIKLTQTDYNNITKSFFFYLENEKELNLNKKEIDSILKTNNKIQ |
| Ga0181401_10839192 | 3300017727 | Seawater | MKTITLTQSDYTNITKAFFYYLENEKTLNLTQTEIDSILETNNKIQ |
| Ga0187219_11977801 | 3300017751 | Seawater | TLTQSDYTNITKAFFFYLENEKSLNLSQKEIDSILDTNSKIQ |
| Ga0181386_10592822 | 3300017773 | Seawater | MKSIKLTQTDYNNITKSFFFYLENEKKLNLTKKEIDSILKTNNKIQ |
| Ga0181424_102550422 | 3300017786 | Seawater | MSKTITLTQSDYTNITKSFFFYRENEKSLNLSQKEIDSILDTNSKIQ |
| Ga0181552_102619433 | 3300017824 | Salt Marsh | MKTITLTQSDYTNITKAFFFYLENEKELNLTKKEIDSILKTNNKIQ |
| Ga0181577_103329761 | 3300017951 | Salt Marsh | MKTITLTQSDYTNITKAFFYYLENEKALNLTQKEIDSILETNSKIQ |
| Ga0180037_10100881 | 3300019214 | Estuarine | MSITKTITLNQNDYNNITKAFFFYLENEKDLNLTQNEINSILQTNSKIQ |
| Ga0181575_100063136 | 3300020055 | Salt Marsh | MSKTITLTQSDYTNITKAFFFYLENEKFLNLSQKEIDSILDTNSKIQ |
| Ga0206125_100641101 | 3300020165 | Seawater | MSNTKTITLNQNDYYNITNAIMFYLENEKDLNLTQNEINSILNTNSKIQ |
| Ga0206125_101254723 | 3300020165 | Seawater | MSNTKTITLTQNDYNNITKAFFFYLENEKDLNLNQNEIKSILKTNSKIQ |
| Ga0206128_10189002 | 3300020166 | Seawater | MSNTKTITLNQNDYYNITNAIMFYLENETQLNLNQNEINSILQTNSKIQ |
| Ga0206128_10669742 | 3300020166 | Seawater | MSTTKTITLNQNDYYNITNAIMFYLENEKDLNLNQNEIDSILQTNSKIQ |
| Ga0206128_13520892 | 3300020166 | Seawater | MSKTKTITLTQNDYNNITKAFFFYLENEKDLNLNQNEIKSILKTN |
| Ga0206130_101166312 | 3300020187 | Seawater | MSKTKTITLTQNDYNNITKAFFFYLENEKDLNLNQNEIKSILKTNSKIQ |
| Ga0211510_10160272 | 3300020336 | Marine | MKTITLTQSDYNNITAAFFFYLENEKALNLTQSEIDSILETNNKIQ |
| Ga0211600_11109111 | 3300020348 | Marine | MKSIKLTQTDYNNITKSFFFYLENEKELNLTKKEIDSILKTNNKIQ |
| Ga0211564_100107689 | 3300020445 | Marine | MKIIKLTQSDYNNITKAFFYYLENEKKLNLTQKEIDSILKTNNKIQ |
| Ga0211564_103669971 | 3300020445 | Marine | MKTITLTQSDYTNITKAFFFYLENEKYLNLTKKEIDSILKTNNKIQ |
| Ga0211543_100052553 | 3300020470 | Marine | VKIIKLTQSDYNNITKAFFYYLENEKKLNLTQKEIDSILKTNNKIQ |
| Ga0213865_100175571 | 3300021373 | Seawater | MKTITLTQSDYTNITNAFFYYLENEKALNLTQTEIDSILETNNKIQ |
| Ga0222717_104193693 | 3300021957 | Estuarine Water | MKTITLTQSDYTNITKAFFYYLENEKVLKLTQQEIDSILETNNKIQ |
| Ga0222718_102000352 | 3300021958 | Estuarine Water | MKTITLTQNDYTNITKAFFYYLENEKALNLTQKEIDSILETNNKIQ |
| Ga0222718_102847152 | 3300021958 | Estuarine Water | MKTITLTQSDYNNITAAFFYYLENEKALNLTQAEIDSILQTNSKIQ |
| Ga0222718_102848182 | 3300021958 | Estuarine Water | MKSITLTQSDYTNITKAFFYYLENEKVLNLTQTEIDSILETNNKIQ |
| Ga0222715_101355937 | 3300021960 | Estuarine Water | MKTIQLTQTDYNNITKAFFFYLENEKQLNLTKKEIESILKTNNKIQ |
| Ga0222715_102201153 | 3300021960 | Estuarine Water | MKTINLTQQDYTNITNAFFFYLENADLTQTEIDFILETNNKIQ |
| Ga0222715_103752781 | 3300021960 | Estuarine Water | MKTITLTQTDYTNITKAFFYYLENEKALKLTQQEIDSILETNNKIQ |
| Ga0222719_102470682 | 3300021964 | Estuarine Water | MKSITLTQSDYTNITKAFFYYLENEKALNLTQTEIDSILETNNKIQ |
| Ga0196899_11656231 | 3300022187 | Aqueous | MSKTITLTQNDYTNITKAFFFYLENEKFLNLSQKEIDSILDTNSKIQ |
| Ga0224508_104428621 | 3300022413 | Sediment | MSITKTITLNQNDYNNITKAFFFYLENEKDLNLTQNEINSI |
| Ga0255752_102870733 | 3300022929 | Salt Marsh | MSKTITLTQSDYTNITKAFFFYLENEKFLNLSQKEIDSILETNSKIQ |
| (restricted) Ga0233408_101211012 | 3300023089 | Seawater | MTKTITLTQNDYTNITKAFFFYLENEKSLNLSQKEIDSILDTNSKIQ |
| (restricted) Ga0233408_101242222 | 3300023089 | Seawater | MSITKTITLNQNDYNNITKAFFFYLENEKDLNLTQKQINSILQTNSKIQ |
| (restricted) Ga0233432_100951441 | 3300023109 | Seawater | MSKTITLTQNDYTNITKAFFFYLENEKSLNLSQKEIDSILDTNSKIQ |
| (restricted) Ga0233412_102891854 | 3300023210 | Seawater | MSITKTITLNQNDYNNITKSFFFYLENEKDLNLTQNEINSILQTNSKIQ |
| (restricted) Ga0233412_103963112 | 3300023210 | Seawater | MKTITLTQNDYTNITKAFFFYLENEKELNLSQQEIESIFETNNKIQ |
| (restricted) Ga0233444_100249706 | 3300024264 | Seawater | MSLQKQITLNQNDYNNITKSFFFYLENEKDLNLTQNEINSILQTNSKIQ |
| (restricted) Ga0233444_101752803 | 3300024264 | Seawater | NQNDYNNITKSFFFYLENEKDLNLTQNEINSILQTNSKIQ |
| Ga0244775_101030693 | 3300024346 | Estuarine | MTKTITLTQSDYTNITKAFFFYLENEKSLNLSQKEIDSILDTNSKIQ |
| Ga0208298_11018771 | 3300025084 | Marine | MSITKTITLNQNDYYNISNAIMFYLENEKDLNLTQTEIDSILNTNSKIQ |
| Ga0208792_10156542 | 3300025085 | Marine | MSITKTITLNQNDYYNISNAIMFYLENEKDLNLNQNEIDSILQTNSKIQ |
| Ga0208157_10020456 | 3300025086 | Marine | MSKTITLTQNDYTNITKAFFFYLENEKFLNLNQKEIDSILDTNSKIQ |
| Ga0208159_10653493 | 3300025101 | Marine | MSKTITLTQSDYTNITNAFFFYLENEKFLNLSQKEIDSILDTNSKIQ |
| Ga0208013_11606921 | 3300025103 | Marine | MSKTKTITLNQNDYYNISNAIMFYLENEKDLNLNQNEIDSILQTNSKIQ |
| Ga0208793_11517741 | 3300025108 | Marine | DNIYESKIYKMSITKTITLNQNDYYNISNAIMFYLENEKDLNLTQTEIDSILNTNSKIQ |
| Ga0208793_11912322 | 3300025108 | Marine | DNIYESKIYKMSITKTITLNQNDYYNISNAIMFYLENEKDLNLNQNEIDSILQTNSKIQ |
| Ga0208162_11779482 | 3300025674 | Aqueous | MKTITLTQTDYNNITKAFFFYLENEKQLNLTKKEIESILKTNNKIQ |
| Ga0209652_10017967 | 3300025684 | Marine | MPNTKTITLNQNDYNNITNALFYYLQNEKLLNLTQNEIDSILKTNNKIQ |
| Ga0209653_11607764 | 3300025695 | Marine | YTNITKAFFFYLENEKSLNLSQKEIDSILDTNSKIQ |
| Ga0209715_11000513 | 3300025699 | Pelagic Marine | YDNIYESKINKQMSNTKTITLNQNDYYNITNAIMFYLENEKDLNLTQNEINSILNTNSKI |
| Ga0209307_10833423 | 3300025832 | Pelagic Marine | MSNTKTITLTQNDYNNITKAFFFYLENEKDLNLNQNEIKSILNTNSKIQ |
| Ga0208880_100002320 | 3300026085 | Marine | MKTITLTQSDYTNITKAFFYYLENEKALNLTQTEIDSILKTNNKIQ |
| Ga0209951_11248382 | 3300026138 | Pond Water | TNITKAFFYYLENEKALNLTQKEIDSILETNNKIQ |
| (restricted) Ga0233415_101795432 | 3300027861 | Seawater | MSTTKTITLNQNDYNNITKSFFFYLENEKDLNLTQNEINSILQTNSKIQ |
| Ga0209404_1000099537 | 3300027906 | Marine | VKIIKLTQSDYNNITKAFFFYLENEKELNLTEKEIDSILKTNNKIQ |
| (restricted) Ga0233414_101396441 | 3300028045 | Seawater | MKTITLTQNDYTNITNAFFYYLENEKVLNLTQKEIDSILETNSKIQ |
| (restricted) Ga0233414_105376771 | 3300028045 | Seawater | MSKTITLTQNDYTNITKAFFFYLENEKSLNLSQKEIDSILDTNSK |
| Ga0183755_10097816 | 3300029448 | Marine | MSNTKTITLNQNDYYNITNAIMFYLENEKDLNLNQNEIDSILQTNSKIQ |
| Ga0183757_100043320 | 3300029787 | Marine | MKTITLTQSDYTNITKAFFFYLENEKQLNLTKKDIDSILKTNNKIQ |
| Ga0307380_105028323 | 3300031539 | Soil | MSNTKTIILNQNDYNNITNALFYYLQNEKSLNLTQNEINSILKTNNKIQ |
| Ga0315332_1000183622 | 3300031773 | Seawater | MLIRCLIDNIINNNNMKSIKLTQTDYNNITKSFFFYLENEKELNLNKKEIDSILKTNNKL |
| Ga0315326_103979853 | 3300031775 | Seawater | MKSIKLTQTDYNNITKSFFFYLENEKELNLNKKEIDSILKTNNKLQ |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |