Scaffold Ga0208880

Basic Information
Taxon OID	3300026085 Open in IMG/M
Scaffold ID	Ga0208880_1000001 Open in IMG/M
Source Dataset Name	Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S23_td_SurfaceB_ad_5m_LV_B (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300026085 Open in IMG/M

Scaffold ID

Ga0208880_1000001 Open in IMG/M

Source Dataset Name

Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S23_td_SurfaceB_ad_5m_LV_B (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	236366
Total Scaffold Genes	251 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	203 (80.88%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (100.00%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

236366

Total Scaffold Genes

251 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

203 (80.88%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (100.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling

Source Dataset Sampling Location
Location Name	Southern Atlantic ocean
Coordinates	Lat. (^o)	Long. (^o)	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Southern Atlantic ocean

Coordinates

Lat. (^o)

Long. (^o)

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F012349	Metagenome / Metatranscriptome	281	Y
F028183	Metagenome / Metatranscriptome	192	N
F040347	Metagenome / Metatranscriptome	162	N
F080078	Metagenome / Metatranscriptome	115	Y
F080917	Metagenome / Metatranscriptome	114	Y
F090459	Metagenome / Metatranscriptome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208880_1000001110	F040347	GGA	MNRWDVTVKQSNYDFNPFRESDHGKSFRTVGNIEPTWKDEIPIANANQYDFYWPSPVSPEGDSFNYDYEELLCKDWGIPLDFVVYRQWTTTDETPILNSLAEQIGLENAQTNIQTQHTGMMLHLHIDSLTGLRKERTDQTSSRATDDEWGRCFVMLDDWAPGHIIQFGNTYVPPWHAGDVIWFDWANIPHSTANTGPWPRNIAKITGKVTQRYKEFVGI
Ga0208880_1000001115	F028183	AGGTGG	MTQETKSMFSEETKSTPYCRELPTLWYDREYLLDHLENIDNEDWYQFDCGHIRWTVHEAFNPRLECKNYKWSEFHYELAMLFKPAITPDTMLYTSTPIGGTPPHQDRNRPAVLNFAVRGKFEDVSPQTFYEDFDRSTKKYVMPYSVSEKTNEFAPWMFKGPEIHGVDNDADEDRVIITSCWRHNSYSEIEQGMLDGSIINWEQNEKNKRIKFL
Ga0208880_100000120	F012349	GAGG	MPATLEVDIEWNEHYALWPVRSSWSKNRIWLKKYWQGDIYYDAMGRPPIKEKSWKLIYTENEYLMYLLKQDENKYQHPLGAPVFKSVRAK
Ga0208880_1000001251	F090459	GGA	MDIKKRIMDTKLFWRLYFWWGIRQARKRRIAREAEMANRPTMTNDEYWEKVHNDRTNNL
Ga0208880_100000160	F080917	GGA	MPLPEGRKALTDQDMVILLHNIARDLENTDLRLTADRFSELAKAASEAQHRAKQG
Ga0208880_100000175	F080078	GAGG	MQHPIEEWIRRINAMKDLCIQAHRVRNEFAEISYKQYDESTCKHLLEQVQSMAAGIANEKITDIKTEMDEWKKND

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0208880_1000001

Overview

Ecosystem & Geography

Associated Families

Sequences