Scaffold Ga0208750_1000044

Overview

Basic Information

• Taxon OID: 3300026082
• Scaffold ID: Ga0208750_1000044
• Source Dataset Name: Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S15_td_O2min_ad_340m_LV (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 30972
• Total Scaffold Genes: 52
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 36 (69.23%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Southern Atlantic ocean
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004630	Metagenome / Metatranscriptome	430	Y
F035723	Metagenome	171	Y
F072758	Metagenome	121	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208750_10000443	F072758	GAGG	MDELYEKYEKLTINHEPLMAAGIMMAQAMKIYKAMLSEDEFKVMTEHILKSRDDIPTSEIPKVH
Ga0208750_100004448	F035723	AGGAG	MVLNLVTNKAEEDAHLRGQSRFYVAGWIANRECENPQEMPKECKGNIVVERWHEEYLTGYGDSVANGECLMNR
Ga0208750_100004451	F004630	AGGA	MDAVMNHRKLMSEYYKDDGSVAKIYQVINGMDGEHSFFSITYKDASGTRLTTEDFKYKSLRYVEDAAENWTLGIKQLLTE