Scaffold Ga0207702_10127023

Overview

Basic Information

• Taxon OID: 3300026078
• Scaffold ID: Ga0207702_10127023
• Source Dataset Name: Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2291
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan, Kellogg Biological Station
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F073197	Metagenome / Metatranscriptome	120	Y
F076134	Metagenome / Metatranscriptome	118	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207702_101270231	F073197	AGG	LVAEHWPHAPDDSQAGVAPPHSPSPAQARQTCVVVLQTGVVPPHWAFDVHGTQVPVVAKHTGVAPEHWVPFVAEHCPHAPPGWQAGVAPPHSLSAPQARQVCVVVLQIGVDPPHCAFDVHGTQVPVVAKHTGVAPEHWAVFVAEHWPQ
Ga0207702_101270232	F076134	N/A	VFAAEHWPQAPHGSHAGVAPPHSLSAPQARQVCVVVLQMGVDPPHCAFDVHGTQVDAGV
Ga0207702_101270233	F073197	AGCAG	VQALAFVAEHWPHAPDDSQAGVAPPHSPSPAQARQVCVAVLHTGAVPPHCAFDVHGTHVPVVVKQAGVAPEHWAVFVAEHWPQAPPGWQAGVAPPQSASPAQDRQVCVVVLQIGVAPPHCAFDVHGTQVPPPV
Ga0207702_101270234	F076134	GAG	LLAEHCPQAPQGSQAGVEPPHSPSPEQARHVCVVVLQTGVEPPHCAFDVHGTHVEAGV