Metagenome / Metatranscriptome Family F076134

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F076134
Family Type	Metagenome / Metatranscriptome
Number of Sequences	118
Average Sequence Length	60 residues
Representative Sequence	LVAEHWPQAPDASQAGVAPPHSPSAAQARQACVAVLQTGVVPPHWAFDVHGTQVPVVV
Number of Associated Samples	80
Number of Associated Scaffolds	106

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	54.31 %
% of genes near scaffold ends (potentially truncated)	50.85 %
% of genes from short scaffolds (< 2000 bps)	87.29 %
Associated GOLD sequencing projects	73
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.35

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (72.034 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere (14.407 % of family members)
Environment Ontology (ENVO)	Unclassified (50.000 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (55.932 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 3.49% β-sheet: 20.93% Coil/Unstructured: 75.58%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.35
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.35
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 106 Family Scaffolds
PF02954	HTH_8	1.89
PF10431	ClpB_D2-small	0.94

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	72.03 %
All Organisms	root	All Organisms	27.97 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	72.03 %
cellular organisms	root	All Organisms → cellular organisms	27.97 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	72.03 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	27.97 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	72.03 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	27.12 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	72.03 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	25.42 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	72.03 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	25.42 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	72.03 %
unclassified Deltaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria	16.95 %
Myxococcales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	6.78 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	72.03 %
Deltaproteobacteria bacterium ADurb.Bin207	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium ADurb.Bin207	15.25 %
environmental samples	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → environmental samples	3.39 %
Cystobacterineae	suborder	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae	3.39 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1.69 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	72.03 %
Deltaproteobacteria bacterium ADurb.Bin207	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium ADurb.Bin207	15.25 %
uncultured Myxococcales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → environmental samples → uncultured Myxococcales bacterium	3.39 %
Myxococcaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Myxococcaceae	2.54 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1.69 %
Archangiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Archangiaceae	0.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	72.03 %
Deltaproteobacteria bacterium ADurb.Bin207	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium ADurb.Bin207	15.25 %
uncultured Myxococcales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → environmental samples → uncultured Myxococcales bacterium	3.39 %
unclassified Myxococcaceae	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Myxococcaceae → unclassified Myxococcaceae	2.54 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1.69 %
Archangium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Archangiaceae → Archangium	0.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	72.03 %
Deltaproteobacteria bacterium ADurb.Bin207	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium ADurb.Bin207	15.25 %
uncultured Myxococcales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → environmental samples → uncultured Myxococcales bacterium	3.39 %
Myxococcaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Myxococcaceae → unclassified Myxococcaceae → Myxococcaceae bacterium	2.54 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1.69 %
Archangium gephyra	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Archangiaceae → Archangium → Archangium gephyra	0.85 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300005535\|Ga0070684_101687641	Not Available	598	Open in IMG/M
3300005563\|Ga0068855_101536231	Not Available	683	Open in IMG/M
3300005563\|Ga0068855_102350857	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → environmental samples → uncultured Myxococcales bacterium	533	Open in IMG/M
3300005587\|Ga0066654_10490924	Not Available	673	Open in IMG/M
3300005614\|Ga0068856_100131781	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → environmental samples → uncultured Myxococcales bacterium	2505	Open in IMG/M
3300005614\|Ga0068856_100898233	Not Available	905	Open in IMG/M
3300005614\|Ga0068856_100898233	Not Available	905	Open in IMG/M
3300005616\|Ga0068852_101867108	Not Available	623	Open in IMG/M
3300005836\|Ga0074470_10997411	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Archangiaceae → Archangium → Archangium gephyra	2360	Open in IMG/M
3300005841\|Ga0068863_101785975	Not Available	625	Open in IMG/M
3300005841\|Ga0068863_102519368	Not Available	524	Open in IMG/M
3300006031\|Ga0066651_10149367	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Myxococcaceae → unclassified Myxococcaceae → Myxococcaceae bacterium	1223	Open in IMG/M
3300006031\|Ga0066651_10149367	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Myxococcaceae → unclassified Myxococcaceae → Myxococcaceae bacterium	1223	Open in IMG/M
3300006031\|Ga0066651_10801138	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium ADurb.Bin207	511	Open in IMG/M
3300006046\|Ga0066652_100125697	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → environmental samples → uncultured Myxococcales bacterium	2113	Open in IMG/M
3300006046\|Ga0066652_101170631	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium ADurb.Bin207	728	Open in IMG/M
3300006358\|Ga0068871_102116937	Not Available	536	Open in IMG/M
3300009093\|Ga0105240_12672624	Not Available	515	Open in IMG/M
3300009156\|Ga0111538_13885648	Not Available	517	Open in IMG/M
3300009551\|Ga0105238_11513526	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium ADurb.Bin207	700	Open in IMG/M
3300009551\|Ga0105238_12499803	Not Available	552	Open in IMG/M
3300009551\|Ga0105238_12733066	Not Available	530	Open in IMG/M
3300009551\|Ga0105238_13029726	Not Available	504	Open in IMG/M
3300010371\|Ga0134125_10385580	Not Available	1554	Open in IMG/M
3300010371\|Ga0134125_10965061	Not Available	935	Open in IMG/M
3300010373\|Ga0134128_12512809	Not Available	568	Open in IMG/M
3300010396\|Ga0134126_12659599	Not Available	543	Open in IMG/M
3300010400\|Ga0134122_11389615	Not Available	715	Open in IMG/M
3300010400\|Ga0134122_13407818	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium ADurb.Bin207	501	Open in IMG/M
3300010401\|Ga0134121_12515502	Not Available	557	Open in IMG/M
3300010401\|Ga0134121_12515502	Not Available	557	Open in IMG/M
3300010401\|Ga0134121_13040894	Not Available	516	Open in IMG/M
3300010403\|Ga0134123_13289433	Not Available	521	Open in IMG/M
3300011269\|Ga0137392_11459113	Not Available	543	Open in IMG/M
3300012354\|Ga0137366_10559460	Not Available	823	Open in IMG/M
3300012916\|Ga0157310_10072180	Not Available	1051	Open in IMG/M
3300012923\|Ga0137359_10723986	Not Available	866	Open in IMG/M
3300012929\|Ga0137404_10208914	Not Available	1657	Open in IMG/M
3300012930\|Ga0137407_10728241	Not Available	935	Open in IMG/M
3300012930\|Ga0137407_10794393	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium ADurb.Bin207	893	Open in IMG/M
3300012930\|Ga0137407_10989031	Not Available	797	Open in IMG/M
3300012944\|Ga0137410_11783179	Not Available	543	Open in IMG/M
3300012955\|Ga0164298_11672608	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium ADurb.Bin207	504	Open in IMG/M
3300012958\|Ga0164299_10180352	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1200	Open in IMG/M
3300012988\|Ga0164306_11948241	Not Available	511	Open in IMG/M
3300013105\|Ga0157369_10985423	Not Available	863	Open in IMG/M
3300013105\|Ga0157369_10985423	Not Available	863	Open in IMG/M
3300013105\|Ga0157369_11690980	Not Available	643	Open in IMG/M
3300013105\|Ga0157369_12323187	Not Available	543	Open in IMG/M
3300013296\|Ga0157374_12504872	Not Available	543	Open in IMG/M
3300013296\|Ga0157374_12504872	Not Available	543	Open in IMG/M
3300014745\|Ga0157377_11646999	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Myxococcaceae → unclassified Myxococcaceae → Myxococcaceae bacterium	516	Open in IMG/M
3300014969\|Ga0157376_11168463	Not Available	797	Open in IMG/M
3300014969\|Ga0157376_11168463	Not Available	797	Open in IMG/M
3300015245\|Ga0137409_10288617	Not Available	1445	Open in IMG/M
3300015264\|Ga0137403_10002616	All Organisms → cellular organisms → Bacteria	21965	Open in IMG/M
3300015371\|Ga0132258_12351771	Not Available	1336	Open in IMG/M
3300016445\|Ga0182038_11954789	Not Available	531	Open in IMG/M
3300018476\|Ga0190274_11289573	Not Available	817	Open in IMG/M
3300018481\|Ga0190271_10039257	Not Available	3919	Open in IMG/M
3300020070\|Ga0206356_10867741	Not Available	649	Open in IMG/M
3300022756\|Ga0222622_10687106	Not Available	743	Open in IMG/M
3300025899\|Ga0207642_10904751	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium ADurb.Bin207	565	Open in IMG/M
3300025912\|Ga0207707_10879118	Not Available	742	Open in IMG/M
3300025912\|Ga0207707_10879118	Not Available	742	Open in IMG/M
3300025916\|Ga0207663_10850768	Not Available	728	Open in IMG/M
3300025920\|Ga0207649_11534696	Not Available	527	Open in IMG/M
3300025924\|Ga0207694_11536172	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium ADurb.Bin207	562	Open in IMG/M
3300025939\|Ga0207665_10975685	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium ADurb.Bin207	674	Open in IMG/M
3300025940\|Ga0207691_10337701	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium ADurb.Bin207	1290	Open in IMG/M
3300025944\|Ga0207661_11095739	Not Available	733	Open in IMG/M
3300025949\|Ga0207667_10798696	Not Available	940	Open in IMG/M
3300025949\|Ga0207667_10962047	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium ADurb.Bin207	843	Open in IMG/M
3300025949\|Ga0207667_11005234	Not Available	821	Open in IMG/M
3300025954\|Ga0210135_1006422	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1030	Open in IMG/M
3300025960\|Ga0207651_11456826	Not Available	616	Open in IMG/M
3300025960\|Ga0207651_11768709	Not Available	556	Open in IMG/M
3300026035\|Ga0207703_11005513	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium ADurb.Bin207	800	Open in IMG/M
3300026035\|Ga0207703_12409287	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium ADurb.Bin207	502	Open in IMG/M
3300026041\|Ga0207639_10229625	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium ADurb.Bin207	1608	Open in IMG/M
3300026078\|Ga0207702_10127023	Not Available	2291	Open in IMG/M
3300026078\|Ga0207702_10127023	Not Available	2291	Open in IMG/M
3300026078\|Ga0207702_10598438	Not Available	1082	Open in IMG/M
3300026078\|Ga0207702_11861949	Not Available	593	Open in IMG/M
3300026078\|Ga0207702_11935947	Not Available	580	Open in IMG/M
3300026142\|Ga0207698_10691123	Not Available	1014	Open in IMG/M
3300026142\|Ga0207698_10922366	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → environmental samples → uncultured Myxococcales bacterium	881	Open in IMG/M
3300026557\|Ga0179587_11155885	Not Available	509	Open in IMG/M
3300028380\|Ga0268265_12118811	Not Available	569	Open in IMG/M
3300031544\|Ga0318534_10855700	Not Available	510	Open in IMG/M
3300031718\|Ga0307474_10251590	Not Available	1353	Open in IMG/M
3300031719\|Ga0306917_10666554	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium ADurb.Bin207	818	Open in IMG/M
3300031748\|Ga0318492_10221030	Not Available	974	Open in IMG/M
3300031751\|Ga0318494_10037965	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	2501	Open in IMG/M
3300031753\|Ga0307477_10484468	Not Available	842	Open in IMG/M
3300031778\|Ga0318498_10326695	Not Available	687	Open in IMG/M
3300031778\|Ga0318498_10326695	Not Available	687	Open in IMG/M
3300031805\|Ga0318497_10335376	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium ADurb.Bin207	844	Open in IMG/M
3300031910\|Ga0306923_10242524	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	2062	Open in IMG/M
3300031912\|Ga0306921_11141948	Not Available	871	Open in IMG/M
3300031912\|Ga0306921_11141948	Not Available	871	Open in IMG/M
3300031912\|Ga0306921_12551840	Not Available	529	Open in IMG/M
3300031938\|Ga0308175_101470656	Not Available	761	Open in IMG/M
3300031938\|Ga0308175_102948533	Not Available	530	Open in IMG/M
3300031939\|Ga0308174_10881347	Not Available	755	Open in IMG/M
3300031962\|Ga0307479_10171639	Not Available	2131	Open in IMG/M
3300031962\|Ga0307479_10171639	Not Available	2131	Open in IMG/M
3300032009\|Ga0318563_10499845	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium ADurb.Bin207	657	Open in IMG/M
3300032065\|Ga0318513_10437067	Not Available	639	Open in IMG/M
3300032068\|Ga0318553_10607299	Not Available	573	Open in IMG/M
3300032068\|Ga0318553_10677494	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium ADurb.Bin207	539	Open in IMG/M
3300032261\|Ga0306920_103460057	Not Available	585	Open in IMG/M
3300033289\|Ga0310914_11342667	Not Available	617	Open in IMG/M
3300034818\|Ga0373950_0000008	All Organisms → cellular organisms → Bacteria → Proteobacteria	390102	Open in IMG/M
3300034818\|Ga0373950_0000008	All Organisms → cellular organisms → Bacteria → Proteobacteria	390102	Open in IMG/M
3300034819\|Ga0373958_0069529	Not Available	779	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	58.47%
Host-Associated	Host-Associated	41.53%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	55.93%
Plants	Host-Associated → Plants	41.53%
Aquatic	Environmental → Aquatic	2.54%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	55.93%
Rhizoplane	Host-Associated → Plants → Rhizoplane	21.19%
Rhizosphere	Host-Associated → Plants → Rhizosphere	19.49%
Sediment	Environmental → Aquatic → Sediment	1.69%
Marine	Environmental → Aquatic → Marine	0.85%
Roots	Host-Associated → Plants → Roots	0.85%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	50.85%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	20.34%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	13.56%
Soil	Host-Associated → Plants → Rhizosphere → Soil	5.93%
Loam	Environmental → Terrestrial → Soil → Loam	5.08%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	1.69%
Wetlands	Environmental → Aquatic → Marine → Wetlands	0.85%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.85%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.85%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	24.58%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	20.34%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	18.64%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	13.56%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	5.93%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	5.08%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	5.08%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	2.54%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	1.69%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	0.85%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.85%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.85%

Habitat	Taxonomy	Distribution
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	14.41%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	9.32%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	9.32%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	8.47%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	5.93%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	5.93%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	5.08%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	5.08%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	5.08%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	4.24%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	3.39%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	3.39%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	3.39%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	2.54%
Rhizosphere Soil	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere Soil	2.54%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	1.69%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	1.69%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	0.85%
Sediment (Intertidal)	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment (Intertidal)	0.85%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.85%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.85%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.85%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.85%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	0.85%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	0.85%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	0.85%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	0.85%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300005535	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG	Environmental	Open in IMG/M
3300005563	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2	Host-Associated	Open in IMG/M
3300005587	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_103	Environmental	Open in IMG/M
3300005614	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2	Host-Associated	Open in IMG/M
3300005616	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2	Host-Associated	Open in IMG/M
3300005836	Microbial communities from Youngs Bay mouth sediment, Columbia River estuary, Oregon - S.42_YBB	Environmental	Open in IMG/M
3300005841	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2	Host-Associated	Open in IMG/M
3300006031	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Angelo_100	Environmental	Open in IMG/M
3300006046	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_101	Environmental	Open in IMG/M
3300006358	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2	Host-Associated	Open in IMG/M
3300009093	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG	Host-Associated	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009551	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG	Host-Associated	Open in IMG/M
3300010371	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1	Environmental	Open in IMG/M
3300010373	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4	Environmental	Open in IMG/M
3300010396	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2	Environmental	Open in IMG/M
3300010400	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2	Environmental	Open in IMG/M
3300010401	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-1	Environmental	Open in IMG/M
3300010403	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3	Environmental	Open in IMG/M
3300011269	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4A metaG	Environmental	Open in IMG/M
3300012354	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_60_16 metaG	Environmental	Open in IMG/M
3300012916	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S213-509R-2	Environmental	Open in IMG/M
3300012923	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaG	Environmental	Open in IMG/M
3300012929	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012930	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012944	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012955	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_216_MG	Environmental	Open in IMG/M
3300012958	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_221_MG	Environmental	Open in IMG/M
3300012986	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_217_MG	Environmental	Open in IMG/M
3300012988	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_242_MG	Environmental	Open in IMG/M
3300013105	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG	Host-Associated	Open in IMG/M
3300013296	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG	Host-Associated	Open in IMG/M
3300014745	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG	Host-Associated	Open in IMG/M
3300014969	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG	Host-Associated	Open in IMG/M
3300015245	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015264	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300016445	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108	Environmental	Open in IMG/M
3300018476	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 531 T	Environmental	Open in IMG/M
3300018481	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 356 T	Environmental	Open in IMG/M
3300020070	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-1 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022756	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_b1	Environmental	Open in IMG/M
3300025899	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025912	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025916	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300025920	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025924	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025939	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025940	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025944	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes)	Environmental	Open in IMG/M
3300025949	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025954	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Sandmound_ThreeSqC_D1 (SPAdes)	Environmental	Open in IMG/M
3300025960	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026035	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026041	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026078	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026095	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026142	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026557	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal	Environmental	Open in IMG/M
3300028380	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300031544	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f26	Environmental	Open in IMG/M
3300031718	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05	Environmental	Open in IMG/M
3300031719	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)	Environmental	Open in IMG/M
3300031748	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f22	Environmental	Open in IMG/M
3300031751	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f24	Environmental	Open in IMG/M
3300031753	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_515	Environmental	Open in IMG/M
3300031778	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f24	Environmental	Open in IMG/M
3300031805	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f23	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031938	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R1	Environmental	Open in IMG/M
3300031939	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.P.R2	Environmental	Open in IMG/M
3300031962	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515	Environmental	Open in IMG/M
3300032009	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f19	Environmental	Open in IMG/M
3300032065	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f20	Environmental	Open in IMG/M
3300032068	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f21	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300033289	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108	Environmental	Open in IMG/M
3300034818	Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_N_3	Host-Associated	Open in IMG/M
3300034819	Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_N_1	Host-Associated	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Ga0070684_1016876411	3300005535	Corn Rhizosphere	LVAEHWPQAPDASQAGVAPPHSPSAAQARQLCAAVLQTGAVPPHCAFDVHGTQVP
Ga0068855_1015362311	3300005563	Corn Rhizosphere	LPAEHCPQAPHGSQAGVDPPHSPSPPQARQLCVVVLQIGVLPPHWALLRHGTQVEAGV*
Ga0068855_1023508571	3300005563	Corn Rhizosphere	VAPVQAALLPSEHWPQAPEAWQAGVAPPQSASPPQARQVCVVVLQTGVMPPHCAFDVHGT
Ga0066654_104909242	3300005587	Soil	VAEHWPQAPVDSQAGVAPPHSPSAAQARQVCVAVLQTGAVPPHWAFDVHGTQVPV
Ga0068856_1001317812	3300005614	Corn Rhizosphere	LLAEHCPQAPQGSQAGVEPPHSPSPEQARHVCVVVLQTGVEPPHCAFDVHGTHVEAGV*
Ga0068856_1008982332	3300005614	Corn Rhizosphere	VAEHWPQAPEAWQAGVAPPQSLSPAQARQVWVAVLHTGAVPPHCAFDVQATQVEAGV*
Ga0068856_1008982333	3300005614	Corn Rhizosphere	VQALALVAEHWPQAPDDSQAGVAPPHSPSLAQARQACVVVLQTGVAPPHCAFDVHGTQVAVGV*
Ga0068852_1018671081	3300005616	Corn Rhizosphere	EHWPQAPVGSQAGVAPPQSPSPPQARQMWLVASQIGVVPPHCALLTQETQVPDPVLQ*
Ga0074470_109974111	3300005836	Sediment (Intertidal)	LLSEHCPHDPDGWQAGLAPPHSLSPPQARQVCVGRLQTGVVPPHCAFDTHGTQV
Ga0068863_1017859751	3300005841	Switchgrass Rhizosphere	APLHALALVAEHWPQAPDAWQAGVAPPHSPSPAQARQACVALLQTGVVPPHWAFDTHGTQVAAGV*
Ga0068863_1025193682	3300005841	Switchgrass Rhizosphere	VAPLHALAFVAEHCPHAPVDWHAGVAPPHSPSPAQARQACVVVLQTGVVPLHCAFDTHGTHVPDGV*
Ga0066651_101493672	3300006031	Soil	VAPAQAVALVAEHWPQAPEGWQAGVAPPHSPSPAQPRQVCVPRLQIGVGPPHCAFDRQGTQVPAGA*
Ga0066651_101493674	3300006031	Soil	LVAEHWPHAPDGSQAGVAPPHSPSAAQARQAWVPVLQIGVVPAHCAFATHGTQVPLVV*
Ga0066651_108011381	3300006031	Soil	VAPPQSEALVAEHWPQAPEGWQAGVAPPHSPSPAQARQVCVATLQTGVAPAHCAFE
Ga0066652_1001256973	3300006046	Soil	LVAEHWPHAPDGWQAGVAPPHSPSPAHARQVCVAVLHTGVVPPHCAFDRQGTQEPAGV*
Ga0066652_1011706311	3300006046	Soil	VAPPQSEALVAEHWPQAPEGWQAGVAPPHSPSPAQARQVCVATLQTGVAPAHCAFERHGT
Ga0068871_1021169372	3300006358	Miscanthus Rhizosphere	LVAEHCAHAPDDAPDVWQAGVAPPHSPSPAQARQAWVVVLHTGVVPLHCAFDTHGTHVADGV*
Ga0105240_126726241	3300009093	Corn Rhizosphere	APEAWQAGVPPPQSLSPAQARQVWVAVLHTGAVPPHCAFDVHGTQVPAGV*
Ga0111538_138856481	3300009156	Populus Rhizosphere	LLVFVAEHWPQAPLAWQAGVAPLHSLSPAQPRHTCVAVLHTGVVPEHCAFDVHGTHTPVVV*
Ga0105238_115135262	3300009551	Corn Rhizosphere	VQAVALENEHCPQAPEAWQAGVAPPHSVSPPQARQVWVVVLQTGVTPPHWAFDVQGTQVPLVVRQ
Ga0105238_124998032	3300009551	Corn Rhizosphere	VQALALLAKHWPQTPVDSQAGIAPPHSPSATQTRQVCVAVLQTGAVPPHWAFEVHGTQVPVVV*
Ga0105238_127330661	3300009551	Corn Rhizosphere	VQALALVAEHWPQAPDASQAGVAPPHSPSDAQARQAWVVVLHTGDVVPHWAFDVHGTHVPVGV*
Ga0105238_130297261	3300009551	Corn Rhizosphere	VQALALLAEHWPHAPDASHAGVAPPHSPSLAQARQAWLVVLQTGVVVPHCAFEVHGTQVPVVV*
Ga0134125_103855803	3300010371	Terrestrial Soil	LVAEHWPQAPDASQAGVAPPHSPSAAQARQACVAVLQTGVVPPHWAFDVHGTQVPVVV*
Ga0134125_109650612	3300010371	Terrestrial Soil	LLAEHWPQAPEDSQAGVAPPHSPSLAQARQAWVVVLHTGVVVPHCAFDVHGTHVPVVV*
Ga0134128_125128091	3300010373	Terrestrial Soil	VAPEQALAFVAEHCPQPPDASQAGVAPPHSPSLAQARQPWIVVLQTGAVPPHWAFDVQGTQVPVVV*
Ga0134126_126595991	3300010396	Terrestrial Soil	VAPEQALAFVAEHCPHAPDASQAGVAPPHSPSLAQARQVWVVVLQTGATPPHCAFEVHGTQVPAVV*
Ga0134122_113896152	3300010400	Terrestrial Soil	VAEHWPHAPPGWQAGVAPPHSLSPAHARHVCVAVLQTGVVPLHWALVRHGTQVAVGV*
Ga0134122_134078181	3300010400	Terrestrial Soil	LPSEHWPQAPDGWQAGLAPPHSLSPAHERQACVAVLQTGVVPPHCAFDTHGTHVAVATSQAGVAPL
Ga0134121_125155021	3300010401	Terrestrial Soil	VAPPQALAFVAEHWPQEPPGWQAGVAPPHSPSPAQARQVCVAVLQTGVLPPHWAFEVHGTQTPVVV*
Ga0134121_125155022	3300010401	Terrestrial Soil	GTSQAGVAPVHWLALVAEHWPQAPVGWQAGVAPPQSVSAAQARQAWVVVLQTGVVPPHWALEMHGTQVPPGV*
Ga0134121_130408941	3300010401	Terrestrial Soil	LALLAEHWPQAPDASQAGVEPPHSPSLAQARQTWVVVLQTGVVVPHCAFDVHGTQVPVVV
Ga0134123_132894331	3300010403	Terrestrial Soil	VAPLHAVALVAEHWAQAPLPWQAGVAPPHSLSPVQARQVCVAVLQIGVVPPHWAFDVHGTQVAVGG*
Ga0137392_114591132	3300011269	Vadose Zone Soil	LVAEHWPQAPLAWQAGVAPPQSTSPAQARHVCAATLQTGVIPPHWAFEVQATQVPDVK*
Ga0137366_105594603	3300012354	Vadose Zone Soil	LPSEHSPQAPDGWQAGVAPPHSPSPEQARQVCVPRLQTGAVPAHCAFDVHGTHVALATSQAGVAP
Ga0157310_100721801	3300012916	Soil	LPSEHWPHAPVGWQAGVPPPHSPSPVQARQVCVAVLHTGAVPAHCAFEVHGTQTPAATLQAG
Ga0137359_107239861	3300012923	Vadose Zone Soil	LVAEHWPQAPLAWQAGVAPPQSESPAQARQTWVVVLQTGVEPPHCAFDTQGTQVPVVVKQTGVA
Ga0137404_102089141	3300012929	Vadose Zone Soil	VVPPHALLLVAEHWPHAPLASQAGVAPPQSPSAAHARQTCVAVLQTGVVPPHWAFATHDTHVLVGV*
Ga0137407_107282411	3300012930	Vadose Zone Soil	VVPPHALLLVAEHWPHAPLASQAGVAPPQSPSAAHARQRCVAVLQTGVVPPHWAFATHDTHVLVGV*
Ga0137407_107943931	3300012930	Vadose Zone Soil	VHAVTLPTEHWPQAPLGWQAGVAPPQSASAAQARHALVVVLQTGVVPPHWAFETHGTQVPVPTLQAGVAPVH
Ga0137407_109890311	3300012930	Vadose Zone Soil	VAEHWPQAPLASQAGVAPPHSESPAQARQTWVLVLQTGVVPPHWAFDVQGTQVDVGV*
Ga0137410_117831792	3300012944	Vadose Zone Soil	VVPPHALLLVAEHWPHAPLASQAGVAPPQSPSAAHARQRRVAVLQTGVVPPHWAFATHDTHVLVGV*
Ga0164298_116726082	3300012955	Soil	MHWLVLASEHCPQAPDGWQAGLAPPHSLSPVHARQVCVVVLQTGVVPPHCAFDTHGTHAAAGV*
Ga0164299_101803522	3300012958	Soil	MRWLVLASEHCPQAPDGWQAGLAPPHSLSPVHARQVCVVVLQTGVVPPHCAFDKHGTHVA
Ga0164304_109838373	3300012986	Soil	VAPEHFDAFVAEHWPQAPPGWQAGVAAGHSASAAQARQVCVAVLQTGVVPPH*
Ga0164306_119482412	3300012988	Soil	VELVAEHWPHEPFDWQAGVEPPHSPSPAQARQACVVVLQTGAVPEHCAF
Ga0157369_109854231	3300013105	Corn Rhizosphere	LLAEHCPQAPHGSQAGVDPPHSPSPAQARQTWVVVLHTGVLPPHWAFDVQATQ
Ga0157369_109854232	3300013105	Corn Rhizosphere	VLVGEHWPQAPDAWQAGVDPPHSPSLPQPRQVCVVVLHTGAVPPHCALDVHGTQVPAPA*
Ga0157369_116909802	3300013105	Corn Rhizosphere	VPPVQALAFVAEHCPQAPDNSQAGVAPPHSPSPAQARQVCVAVLHTGAVPPHWAFEVHGTQVPVVV*
Ga0157369_123231872	3300013105	Corn Rhizosphere	LVAEHCPQAPHGSQAGVDPPHSPSPAQARQVCVEVLQTGVFPPHWAFEVQATQVEAGV*
Ga0157374_125048722	3300013296	Miscanthus Rhizosphere	LLAEHWPQAPDASQAGVEPPHSPSLAQARQTWVVVLQTGVVVPHCAFDVHGTQVPVVV*
Ga0157374_125048723	3300013296	Miscanthus Rhizosphere	VHCVLLVAEHCPHDPDGGQAGVAPPHSPSPGQARQVCVVVLQTGAAPPHWAFDVHGTQVESGA*
Ga0157377_116469991	3300014745	Miscanthus Rhizosphere	VAPVQRALLPSEHWPQAPLGWQAGVAPPHSPSPAQARQVCVAVLHTGIVPVHCAFEVQ
Ga0157376_111684631	3300014969	Miscanthus Rhizosphere	HWPQAPELWQAGVAPPHSLSPAQARQVCVVVLQTGVDPPHCAFDVHGTQVAAGV*
Ga0157376_111684632	3300014969	Miscanthus Rhizosphere	VALVAEHWAAFVAEHCPHDPDGWQAGVAPPHSPSPAQARQVCVVVLQTGAAPPHWAFDVHGTQVESGA*
Ga0137409_102886172	3300015245	Vadose Zone Soil	LVAEHWPHAPLASQAGVAPPQSPSAAHARQRRVAVLQTGVVPPHWAFATHDTHVLVGV*
Ga0137403_1000261618	3300015264	Vadose Zone Soil	LVAEHWPHAPLASQAGVAPPQSPSAAHARQTCVAVLQTGVVPPHWAFATHDTHVLVGV*
Ga0132258_123517711	3300015371	Arabidopsis Rhizosphere	VFPSEHWPQAPDGWQAGVAPPHSPSAPQARQVWVAVLHTGLVPPHCAFDVHGT
Ga0182038_119547892	3300016445	Soil	LVAEHWPHAPEGSQAGVVPPHSPSLPQARQVWVPVLQTGAVPLHCAFDVHGTHVPVVVKQAG
Ga0190274_112895732	3300018476	Soil	LPSEHWPHAPVGWQAGVAPPHSPSPVQARQVCVAVLHTGVVPAHCAFEVH
Ga0190271_100392574	3300018481	Soil	LPSEHSPHAPLGWHAGAAPPHSPSPAHARQVCVARLHTGEVPPHCAFDVHGTHVAAATSH
Ga0206356_108677411	3300020070	Corn, Switchgrass And Miscanthus Rhizosphere	VAEHWPQAPDDSQAGVDPPHSPSLAQARQLCVAVLQTGVVPPHWAFDTHGTHVPAGV
Ga0222622_106871062	3300022756	Groundwater Sediment	AEHCPQAPDAWQAGVAPPHSPSPAQPRQACVVVLQIGALPVHCPFDTHGTHVADGV
Ga0207642_109047511	3300025899	Miscanthus Rhizosphere	LPSEHWPQAPLGWQAGVAPLHSPSAPQARQVCVAVLQTGFVPPHWAFDVHGTQVAEAASQTDVAP
Ga0207707_108791181	3300025912	Corn Rhizosphere	VAEHWPQAPDDSQAGVDPPHSPSLAQARQLCVAVLQTGVVPPHWAFDVHGTHVPVVVKQ
Ga0207707_108791182	3300025912	Corn Rhizosphere	LPAEHCPQAPHGSQAGVDPPHSPSPPQARQLCVVVLQIGVLPPHWALLRHGTQVEAGV
Ga0207663_108507682	3300025916	Corn, Switchgrass And Miscanthus Rhizosphere	VLPAHVEAFVAEHCPQAPDAWQAGVAPPQSASPPQARQVCVAVLQMGVVPPHCAFDTHGTQAPVVV
Ga0207649_115346962	3300025920	Corn Rhizosphere	LPSEHWPQAPLGWQAGVAPLHSPSAPQARQVCVAVLQTGVDPPHCAFDVHGTQVAVGALQTGVAPLQ
Ga0207694_115361722	3300025924	Corn Rhizosphere	LENEHCPQAPEAWQAGVAPPHSVSPPQARQVWVVVLQTGVTPPHWAFDVQGTQVPLVVRQAGVAP
Ga0207665_109756852	3300025939	Corn, Switchgrass And Miscanthus Rhizosphere	VQATLLESEHWPQAPEGWQAGVDPPHSASAAQERQVCVVVLHTGVMPPHWAFDVQGTQIPDGV
Ga0207691_103377011	3300025940	Miscanthus Rhizosphere	LPSEHCPHDPDGWQAGVAPPHSLSPVHERQVCVAVLQTGVVPPHCAFEVQGTQVPD
Ga0207661_110957392	3300025944	Corn Rhizosphere	VQALALVAEHWPQAPDASQAGVAPPHSPSAAQARQLCAAVLQTGAVPPHCAFDVHGTQVPVVV
Ga0207667_107986963	3300025949	Corn Rhizosphere	LFVAEHCPQAPDAWQAGVAPPQSTSPAQDRQVCVAVLQTGVVPPHCAFDVHGTHVPVVV
Ga0207667_109620471	3300025949	Corn Rhizosphere	VAPLHWVVLLAEHWPQAPEVWQAGVEPPHSPSPAQARQVCVAVLHTGVEPPHWALDTHGTQVELGV
Ga0207667_110052342	3300025949	Corn Rhizosphere	VAPEHWPVLVVEHWPQAPHGSQAGVAPPHSPSPAQARQLCVLVLQTGVLPPHWAFVRQGTQVDAGV
Ga0210135_10064222	3300025954	Natural And Restored Wetlands	VPPHADVFVAEHCPHAPLPWHAGVRPPHSLSPAHARHWCSVVLHTGVVPPHCAFDTHGTHVPVGV
Ga0207651_114568262	3300025960	Switchgrass Rhizosphere	VQRDVLPAEHSPHAPLAWQAGVVPPHSLSPAHDRQVCVAVLHTGAVPPHCALVTHGT
Ga0207651_117687091	3300025960	Switchgrass Rhizosphere	VQRALFAAEHSPQAPDGWQAGVAPPQSPSPAQARQVLLARSHTGFAPPHWAFE
Ga0207703_110055132	3300026035	Switchgrass Rhizosphere	VQSVAFVAEHCPHAPDVWQAGVAPPHSLSPPQARQVCVLRLQTGVVPPHWAFDTHGTQVPAGV
Ga0207703_124092871	3300026035	Switchgrass Rhizosphere	MHWLVLASEHCPQAPDGWQAGLAPPHSLSPVHARQVCVVVLQTGVVPPHCAFDTHGTHVAVVVSQAG
Ga0207639_102296255	3300026041	Corn Rhizosphere	VQALAFVAEHWPQAPDDWQAGVDPPHSPSPLQARQTCVAVLHTGVVPPHCAFDTHGTQVPVV
Ga0207702_101270232	3300026078	Corn Rhizosphere	VFAAEHWPQAPHGSHAGVAPPHSLSAPQARQVCVVVLQMGVDPPHCAFDVHGTQVDAGV
Ga0207702_101270234	3300026078	Corn Rhizosphere	LLAEHCPQAPQGSQAGVEPPHSPSPEQARHVCVVVLQTGVEPPHCAFDVHGTHVEAGV
Ga0207702_105984382	3300026078	Corn Rhizosphere	VQALALVAEHWPQAPDDSQAGVAPPHSPSLAQARQACVVVLQTGVAPPHCAFDVHGTQVAVGV
Ga0207702_118619491	3300026078	Corn Rhizosphere	HWPQAPLASQAGVDPPQSLSAAQARQVWAAVLQTGVVPPHCAFEVQGTQVPVVV
Ga0207702_119359471	3300026078	Corn Rhizosphere	VQALALVAEHCPHAPDDSQAGVAPPHSPSLAQDRQTWVVVLQTGVVPPHWAFDVHGTQVPVVV
Ga0207676_113094772	3300026095	Switchgrass Rhizosphere	WPHAPDDWQAGVAPPHSLSPPQPRQVCVLRLHTGVVPPHCAFDTQGTHVADGV
Ga0207698_106911234	3300026142	Corn Rhizosphere	VAPEHLLALVAEHCPQAPDGWQAGVEPLHSPSPPQARQVCVAVLQTGVVPPHCAFEVQGTQVP
Ga0207698_109223662	3300026142	Corn Rhizosphere	LVAEQTPHAPEGWQAGVAPPQSLSPAQARQVWVAVLQTGAVPPHCAFDVQATQVEAGV
Ga0179587_111558851	3300026557	Vadose Zone Soil	VHLVVLPIEHWPQAPLGWQAGVTPPHSPSPAQARQACVVVLQTGVIPPQVAFVVQGTHVAVATSQAS
Ga0268265_121188112	3300028380	Switchgrass Rhizosphere	LVAEHCAQAPDEAPDVWQAGVAPPHSPSPAQARQACVVVLQTGVVPLHCAFDTHGTQVPD
Ga0318534_108557002	3300031544	Soil	ELVAEHWPQAPDDSQAGVAPPHSPSPAHWRHMCVVVLQTGVVPLHCAFDVQGTQVPVAV
Ga0307474_102515901	3300031718	Hardwood Forest Soil	VHFDVLEAEHWPQAPLAWQAGVAPPQSASPAQARHVCAATLHTGVVPPHWAFEVQLTH
Ga0306917_106665541	3300031719	Soil	VLVAEHWPQEPDGWQAGVEPPQSVSAPHARQVCVVVLQIGVVLPHWAFDTHGTQVPPAV
Ga0318492_102210303	3300031748	Soil	VAPLHRLALVAEHWPHAPEGSQAGVAPPHSPSPAQARQVCEAVLQTGVVPPH
Ga0318494_100379653	3300031751	Soil	VAPLHRLALVAEHWPHAPEGSQAGVAPPHSPSPAQARQVCEAVLQTGVVPPHWAFDRHGTQLPDAA
Ga0307477_104844682	3300031753	Hardwood Forest Soil	VVPPHALALVAEHWPQMPEAWQAGVAPPQSASAAQARQVCVAVLQMGVAPPHCAFERQGTQVPVVV
Ga0318498_103266951	3300031778	Soil	VAEHWPHAPEGSQAGVAPPHSPSPAQARQVCEAVLQTGVVPPHWAFDRHGTQLPDAA
Ga0318498_103266952	3300031778	Soil	KQAGVAPLHRLVLVAEHWPQEPDGWQAGVEPPQSVSAPHARQVCVVVLQIGVVLPHWAFDTHGTQVPPAV
Ga0318497_103353762	3300031805	Soil	VAPLHRLALVAEHWPHAPEGSQAGVEPPQSVSAPHARQVCVVVLQIGVVLPHWAFDTHGTQVPPAV
Ga0306923_102425241	3300031910	Soil	VAEHWPHAPVGSQAGVAPPHSLSAPQARQVCEAVLQIGVVPPHWAFDVHGTHVPFVVK
Ga0306921_111419483	3300031912	Soil	VAEHWPQAPDDSQAGVAPPHSPSLAHCRHRCVVVLHTGVVPPHWAFDVHGTQVPVGV
Ga0306921_111419484	3300031912	Soil	VAEHWPQAPDDSQAGVAPPHSLSPAHARQACVVVLQTGVVPPHCAFDVHGTQVEVGV
Ga0306921_125518401	3300031912	Soil	PEGSQAGVAPPHSPSLPQARQVCEAVLQTGVVPPHCALEVHGTHVPLVA
Ga0308175_1014706561	3300031938	Soil	VAPVQAALFDSEHWPQAPDAWQAGVEPPHSPSDAQARQLCVVVLHTGVMPPHWALEV
Ga0308175_1029485332	3300031938	Soil	AVKHAGVAPAQALALVAEHCPHAPDAWHAGVAPPHSLSPPQPRQVCVLRLQTGDVPPHWAFDTHGTQVPAGV
Ga0308174_108813471	3300031939	Soil	VALVAEHCAHAPLAWQAGVAPLQSTSPPQARHRCVVVLHTGVVPPHWAFDVHGTQSAAGV
Ga0307479_101716391	3300031962	Hardwood Forest Soil	VAPPQAVALVAEHWPQAPLASHAGVAPPHSTSPAQARHVCVVVLQTGDVPPHWAFDVHGTHFPVVV
Ga0307479_101716392	3300031962	Hardwood Forest Soil	VVPPHALLLVAEHWPQAPLASQAGVAPPQSPSAAHARQRCVAVLQTGDVPPHWAFATHDTHVLVGV
Ga0318563_104998451	3300032009	Soil	LVAEHWPHAPEGSQAGVVPPHSPSLPQARQVWVPVLQTGAVPLH
Ga0318513_104370671	3300032065	Soil	VAPLHRLALVAEHWPHAPEGSQAGVAPPHSPSPAQARQVCEAVLQIGVVPPHWAFDVHG
Ga0318553_106072992	3300032068	Soil	VAEHWPHAPVGSQAGVAPPHSPSPAQARQVCEAALQTGVVPPHCAL
Ga0318553_106774941	3300032068	Soil	VVLVAEHWAQAPLAWQAGVAPGHSASPAQARQVCVAVLQTGVVPPHCASET
Ga0306920_1034600571	3300032261	Soil	VAEHWPHAPVGSQAGVAPPHSLSAPQARQVCEAVLQTGVVPPHWAFDRHGTQLPDAA
Ga0310914_113426671	3300033289	Soil	LVAEHWPHAPDGSQAGVVPWQSPSPPHARQACVAVLQTGTVPPHWAS
Ga0373950_0000008_378133_378324	3300034818	Rhizosphere Soil	VQAVVLVAEHCPQAPLPWQAGVAPPQSASPAQARQAWVVVLQTGFVPEHCVFETHGTHVPLGV
Ga0373950_0000008_380656_380829	3300034818	Rhizosphere Soil	VAEHWPHAPFGWQAGVLPPHWLSLAQAWQACVVVLQMGVVPPHCALLRQGTQVPVVA
Ga0373958_0069529_589_777	3300034819	Rhizosphere Soil	FVAEHCPHAPDEAPDVWQAGVAPPHSLSPPQPRQVCVLRLQTGVVPPHCAFDTHGTQVPAGV

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F076134

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences