Scaffold Ga0208261_1001506

Overview

Basic Information

• Taxon OID: 3300026076
• Scaffold ID: Ga0208261_1001506
• Source Dataset Name: Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S7_td_DCM_ad_131m_LV_B (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8332
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (33.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling

Source Dataset Sampling Location

• Location Name: South Atlantic Ocean
• Coordinates
  • Lat. (^o): -0.4612
  • Long. (^o): -23.033259

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007891	Metagenome / Metatranscriptome	343	Y
F018380	Metagenome / Metatranscriptome	235	Y
F042559	Metagenome / Metatranscriptome	158	Y
F084708	Metagenome / Metatranscriptome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208261_100150610	F007891	N/A	MTLYSNFTSNAIESVETKENAVFITYSSNLEKNYEYNCVNVPEFTNNLCSVLISNELQQDGGSVGRFIQQSRRDSVLTDK
Ga0208261_100150612	F018380	N/A	MSNNTFTFTDDELLCLQVCLQNAPCPYDIGKKKLVSTLEDKIGKPPKIEVEPLSMPKYDLTKYGIND
Ga0208261_100150620	F084708	N/A	MSYMNSMNQSKVDDELKKLAMDYIKATNANDQSLAETILNDMQVMRELMKEK
Ga0208261_10015066	F042559	AGGAGG	MSVISEFYSGLLDKGYTEREIRESCKRHQERVAPDWFNGTYAEYLESMHDFLNGL