Scaffold Ga0207678_10059023

Overview

Basic Information

• Taxon OID: 3300026067
• Scaffold ID: Ga0207678_10059023
• Source Dataset Name: Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3301
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (28.57%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan, Kellogg Biological Station
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F043470	Metagenome	156	Y
F054734	Metagenome / Metatranscriptome	139	Y
F094034	Metagenome / Metatranscriptome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207678_100590232	F094034	N/A	VNVLWGAIGASVAAFVLVRLWSRYQEPNDASLGSVSEQWLAEQRLNRPDSQR
Ga0207678_100590233	F054734	N/A	MAVNSQNVYRDAVSAHHLPESIVGTVSLARLSMAFSQMVDDLKSRGAPADQQKVFQGAIAYAAERARHLTPAERTAVQNVLSTAFEGLPRNHSAMAVRGDFLRQVTFPPGRA
Ga0207678_100590236	F043470	N/A	MPTDKTEEFQKQTLDLLRSQQEAYLTAVKAWREAMAAGSAQAPAWPTFPNTETLPTPAEVAEASYAFAAKLLADQSRFMEELSRAMAPPPDKKV