Metagenome / Metatranscriptome Family F094034

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

Select file to download:
Download

Overview

Basic Information
Family ID	F094034
Family Type	Metagenome / Metatranscriptome
Number of Sequences	106
Average Sequence Length	56 residues
Representative Sequence	VFDPVNVLWGAIGASVAVFVAARAWSRYQGPKNSSLGSVSEQWLAEQRLNRPDSQR
Number of Associated Samples	81
Number of Associated Scaffolds	105

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	39.62 %
% of genes near scaffold ends (potentially truncated)	31.13 %
% of genes from short scaffolds (< 2000 bps)	83.02 %
Associated GOLD sequencing projects	72
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.45

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign

Most Common Taxonomy
Group	Bacteria (51.887 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (13.207 % of family members)
Environment Ontology (ENVO)	Unclassified (55.660 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (69.811 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Select alignment to view:

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 54.76% β-sheet: 0.00% Coil/Unstructured: 45.24%
Feature Viewer

Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.45
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.45
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 105 Family Scaffolds
PF00027	cNMP_binding	8.57
PF13715	CarbopepD_reg_2	6.67
PF01594	AI-2E_transport	6.67
PF13545	HTH_Crp_2	4.76
PF00313	CSD	3.81
PF00326	Peptidase_S9	3.81
PF13560	HTH_31	2.86
PF00171	Aldedh	2.86
PF12543	DUF3738	1.90
PF04366	Ysc84	1.90
PF02518	HATPase_c	1.90
PF11999	Ice_binding	0.95
PF13193	AMP-binding_C	0.95
PF13442	Cytochrome_CBB3	0.95
PF01244	Peptidase_M19	0.95
PF08241	Methyltransf_11	0.95
PF12704	MacB_PCD	0.95
PF13360	PQQ_2	0.95
PF13620	CarboxypepD_reg	0.95
PF13570	PQQ_3	0.95
PF07626	PSD3	0.95
PF07635	PSCyt1	0.95
PF04041	Glyco_hydro_130	0.95

COG ID	Name	Functional Category	% Frequency in 105 Family Scaffolds
COG0628	Predicted PurR-regulated permease PerM	General function prediction only [R]	6.67
COG0014	Gamma-glutamyl phosphate reductase	Amino acid transport and metabolism [E]	2.86
COG1012	Acyl-CoA reductase or other NAD-dependent aldehyde dehydrogenase	Lipid transport and metabolism [I]	2.86
COG4230	Delta 1-pyrroline-5-carboxylate dehydrogenase	Amino acid transport and metabolism [E]	2.86
COG2930	Lipid-binding SYLF domain, Ysc84/FYVE family	Lipid transport and metabolism [I]	1.90
COG2152	Predicted glycosyl hydrolase, GH43/DUF377 family	Carbohydrate transport and metabolism [G]	0.95
COG2355	Zn-dependent dipeptidase, microsomal dipeptidase homolog	Posttranslational modification, protein turnover, chaperones [O]	0.95

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	51.89 %
Unclassified	root	N/A	48.11 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	51.89 %
Unclassified	root	N/A	48.11 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	51.89 %
Unclassified	root	N/A	48.11 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	48.11 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	21.70 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	3.77 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1.89 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	48.11 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	9.43 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1.89 %
Vicinamibacteria	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria	0.94 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	0.94 %
Planctomycetes	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	0.94 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.94 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	48.11 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	8.49 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1.89 %
Acidobacteria bacterium 13_1_40CM_2_64_6	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_40CM_2_64_6	0.94 %
Vicinamibacterales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales	0.94 %
Bryobacterales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	0.94 %
Planctomycetia	class	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia	0.94 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.94 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	48.11 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	8.49 %
Micrococcales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales	1.89 %
Vicinamibacteraceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae	0.94 %
Planctomycetales	order	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales	0.94 %
Acidobacteria bacterium 13_1_40CM_2_64_6	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_40CM_2_64_6	0.94 %
Bryobacterales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	0.94 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.94 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	48.11 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	8.49 %
Micrococcales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales	1.89 %
Luteitalea	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea	0.94 %
Planctomycetaceae	family	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae	0.94 %
Acidobacteria bacterium 13_1_40CM_2_64_6	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_40CM_2_64_6	0.94 %
Bryobacterales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	0.94 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.94 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	48.11 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	8.49 %
Micrococcales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales	1.89 %
unclassified Luteitalea	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea → unclassified Luteitalea	0.94 %
unclassified Planctomycetaceae	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → unclassified Planctomycetaceae	0.94 %
Acidobacteria bacterium 13_1_40CM_2_64_6	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_40CM_2_64_6	0.94 %
Bryobacterales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	0.94 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.94 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	48.11 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	8.49 %
Micrococcales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales	1.89 %
Luteitalea sp.	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea → unclassified Luteitalea → Luteitalea sp.	0.94 %
Planctomycetaceae bacterium SCGC AG-212-F19	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → unclassified Planctomycetaceae → Planctomycetaceae bacterium SCGC AG-212-F19	0.94 %
Acidobacteria bacterium 13_1_40CM_2_64_6	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_40CM_2_64_6	0.94 %
Bryobacterales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	0.94 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.94 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.94 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300004114\|Ga0062593_100059753	All Organisms → cellular organisms → Bacteria	2444	Open in IMG/M
3300004156\|Ga0062589_102575497	Not Available	527	Open in IMG/M
3300005328\|Ga0070676_10837300	Not Available	681	Open in IMG/M
3300005330\|Ga0070690_100006852	All Organisms → cellular organisms → Bacteria	6481	Open in IMG/M
3300005331\|Ga0070670_100708108	All Organisms → cellular organisms → Bacteria → Acidobacteria	906	Open in IMG/M
3300005333\|Ga0070677_10079569	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1399	Open in IMG/M
3300005333\|Ga0070677_10191808	All Organisms → cellular organisms → Bacteria	980	Open in IMG/M
3300005333\|Ga0070677_10888767	Not Available	514	Open in IMG/M
3300005340\|Ga0070689_100073582	All Organisms → cellular organisms → Bacteria	2673	Open in IMG/M
3300005340\|Ga0070689_100453863	All Organisms → cellular organisms → Bacteria → Acidobacteria	1091	Open in IMG/M
3300005340\|Ga0070689_100572362	Not Available	975	Open in IMG/M
3300005356\|Ga0070674_100199046	All Organisms → cellular organisms → Bacteria	1546	Open in IMG/M
3300005441\|Ga0070700_100760939	Not Available	776	Open in IMG/M
3300005441\|Ga0070700_101826280	Not Available	524	Open in IMG/M
3300005456\|Ga0070678_100866980	Not Available	824	Open in IMG/M
3300005467\|Ga0070706_101258455	Not Available	679	Open in IMG/M
3300005539\|Ga0068853_100819230	All Organisms → cellular organisms → Bacteria	892	Open in IMG/M
3300005543\|Ga0070672_101619435	Not Available	581	Open in IMG/M
3300005564\|Ga0070664_100543837	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_40CM_2_64_6	1073	Open in IMG/M
3300005615\|Ga0070702_101254381	Not Available	600	Open in IMG/M
3300005617\|Ga0068859_101181208	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales	842	Open in IMG/M
3300005618\|Ga0068864_102575031	Not Available	515	Open in IMG/M
3300005719\|Ga0068861_101255194	Not Available	719	Open in IMG/M
3300005841\|Ga0068863_101389093	Not Available	710	Open in IMG/M
3300005841\|Ga0068863_101864398	Not Available	611	Open in IMG/M
3300005841\|Ga0068863_102155790	Not Available	567	Open in IMG/M
3300006031\|Ga0066651_10076251	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1637	Open in IMG/M
3300006046\|Ga0066652_100347310	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1334	Open in IMG/M
3300006237\|Ga0097621_100431679	Not Available	1184	Open in IMG/M
3300006876\|Ga0079217_10551687	Not Available	733	Open in IMG/M
3300006881\|Ga0068865_100553920	All Organisms → cellular organisms → Bacteria	966	Open in IMG/M
3300006881\|Ga0068865_100597887	All Organisms → cellular organisms → Bacteria → Acidobacteria	932	Open in IMG/M
3300009176\|Ga0105242_10572442	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1086	Open in IMG/M
3300009177\|Ga0105248_10057621	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	4361	Open in IMG/M
3300009177\|Ga0105248_12613289	Not Available	576	Open in IMG/M
3300009551\|Ga0105238_10006628	All Organisms → cellular organisms → Bacteria	11543	Open in IMG/M
3300009610\|Ga0105340_1008724	All Organisms → cellular organisms → Bacteria → Proteobacteria	4036	Open in IMG/M
3300010399\|Ga0134127_10245093	Not Available	1694	Open in IMG/M
3300010399\|Ga0134127_10578349	All Organisms → cellular organisms → Bacteria → Acidobacteria	1148	Open in IMG/M
3300010401\|Ga0134121_11908020	Not Available	624	Open in IMG/M
3300010403\|Ga0134123_10066884	All Organisms → cellular organisms → Bacteria	2755	Open in IMG/M
3300012909\|Ga0157290_10426531	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	524	Open in IMG/M
3300012916\|Ga0157310_10328271	All Organisms → cellular organisms → Bacteria	610	Open in IMG/M
3300013308\|Ga0157375_10552009	All Organisms → cellular organisms → Bacteria	1314	Open in IMG/M
3300013308\|Ga0157375_12209528	Not Available	655	Open in IMG/M
3300013308\|Ga0157375_12823240	Not Available	581	Open in IMG/M
3300014325\|Ga0163163_11834870	Not Available	666	Open in IMG/M
3300014969\|Ga0157376_11405397	All Organisms → cellular organisms → Bacteria → Acidobacteria	729	Open in IMG/M
3300014969\|Ga0157376_12977249	Not Available	513	Open in IMG/M
3300015371\|Ga0132258_12559113	Not Available	1276	Open in IMG/M
3300015373\|Ga0132257_103880319	Not Available	544	Open in IMG/M
3300017792\|Ga0163161_10264919	Not Available	1343	Open in IMG/M
3300017792\|Ga0163161_11529617	Not Available	586	Open in IMG/M
3300017965\|Ga0190266_10114606	All Organisms → cellular organisms → Bacteria	1139	Open in IMG/M
3300018083\|Ga0184628_10000263	All Organisms → cellular organisms → Bacteria	30998	Open in IMG/M
3300018083\|Ga0184628_10000263	All Organisms → cellular organisms → Bacteria	30998	Open in IMG/M
3300018469\|Ga0190270_10450437	All Organisms → cellular organisms → Bacteria	1210	Open in IMG/M
3300018476\|Ga0190274_10147148	All Organisms → cellular organisms → Bacteria → Acidobacteria	1980	Open in IMG/M
3300018476\|Ga0190274_10380140	All Organisms → cellular organisms → Bacteria	1359	Open in IMG/M
3300018476\|Ga0190274_11208184	Not Available	840	Open in IMG/M
3300018481\|Ga0190271_10316591	Not Available	1628	Open in IMG/M
3300018481\|Ga0190271_10829828	Not Available	1049	Open in IMG/M
3300018481\|Ga0190271_11168249	Not Available	892	Open in IMG/M
3300018481\|Ga0190271_11251759	All Organisms → cellular organisms → Bacteria	863	Open in IMG/M
3300019356\|Ga0173481_10036259	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1618	Open in IMG/M
3300022756\|Ga0222622_11468203	All Organisms → cellular organisms → Bacteria → Acidobacteria	502	Open in IMG/M
3300023067\|Ga0247743_1069662	All Organisms → cellular organisms → Bacteria	532	Open in IMG/M
3300025321\|Ga0207656_10019753	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales	2668	Open in IMG/M
3300025324\|Ga0209640_10755811	Not Available	770	Open in IMG/M
3300025893\|Ga0207682_10106354	Not Available	1231	Open in IMG/M
3300025899\|Ga0207642_10718678	Not Available	630	Open in IMG/M
3300025907\|Ga0207645_10086586	All Organisms → cellular organisms → Bacteria → Acidobacteria	2013	Open in IMG/M
3300025908\|Ga0207643_10055430	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea → unclassified Luteitalea → Luteitalea sp.	2254	Open in IMG/M
3300025908\|Ga0207643_10073080	All Organisms → cellular organisms → Bacteria → Acidobacteria	1976	Open in IMG/M
3300025923\|Ga0207681_10312816	All Organisms → cellular organisms → Bacteria	1246	Open in IMG/M
3300025924\|Ga0207694_10048016	All Organisms → cellular organisms → Bacteria → Acidobacteria	3302	Open in IMG/M
3300025926\|Ga0207659_10022657	All Organisms → cellular organisms → Bacteria	4183	Open in IMG/M
3300025926\|Ga0207659_10064929	All Organisms → cellular organisms → Bacteria	2644	Open in IMG/M
3300025933\|Ga0207706_11457707	Not Available	560	Open in IMG/M
3300025934\|Ga0207686_10443744	Not Available	997	Open in IMG/M
3300025937\|Ga0207669_10374240	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1108	Open in IMG/M
3300025937\|Ga0207669_11611267	Not Available	554	Open in IMG/M
3300025940\|Ga0207691_11288672	Not Available	604	Open in IMG/M
3300025942\|Ga0207689_10096544	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	2427	Open in IMG/M
3300025960\|Ga0207651_10510734	Not Available	1040	Open in IMG/M
3300026067\|Ga0207678_10059023	All Organisms → cellular organisms → Bacteria	3301	Open in IMG/M
3300026088\|Ga0207641_10223647	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1747	Open in IMG/M
3300026088\|Ga0207641_12506181	Not Available	514	Open in IMG/M
3300026089\|Ga0207648_10673776	Not Available	957	Open in IMG/M
3300026118\|Ga0207675_100680930	All Organisms → cellular organisms → Bacteria → Proteobacteria	1036	Open in IMG/M
3300027533\|Ga0208185_1012866	All Organisms → cellular organisms → Bacteria	2092	Open in IMG/M
3300028381\|Ga0268264_10349867	Not Available	1406	Open in IMG/M
3300028381\|Ga0268264_12381523	Not Available	536	Open in IMG/M
3300028812\|Ga0247825_10379386	Not Available	996	Open in IMG/M
3300030635\|Ga0247627_10304915	Not Available	534	Open in IMG/M
3300031200\|Ga0307496_10084591	All Organisms → cellular organisms → Bacteria → Acidobacteria	595	Open in IMG/M
3300031538\|Ga0310888_10216052	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1061	Open in IMG/M
3300031562\|Ga0310886_10278060	All Organisms → cellular organisms → Bacteria	948	Open in IMG/M
3300031943\|Ga0310885_10207874	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	971	Open in IMG/M
3300031944\|Ga0310884_10970544	Not Available	527	Open in IMG/M
3300032013\|Ga0310906_10902561	All Organisms → cellular organisms → Bacteria	630	Open in IMG/M
3300032157\|Ga0315912_10494358	Not Available	972	Open in IMG/M
3300032205\|Ga0307472_102754074	Not Available	503	Open in IMG/M
3300033811\|Ga0364924_150932	Not Available	548	Open in IMG/M
3300034148\|Ga0364927_0038394	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → unclassified Planctomycetaceae → Planctomycetaceae bacterium SCGC AG-212-F19	1216	Open in IMG/M
3300034690\|Ga0364923_0231743	Not Available	503	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Host-Associated	Host-Associated	53.77%
Environmental	Environmental	46.23%

Habitat	Taxonomy	Distribution
Plants	Host-Associated → Plants	53.77%
Terrestrial	Environmental → Terrestrial	41.51%
Aquatic	Environmental → Aquatic	4.72%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	38.68%
Rhizosphere	Host-Associated → Plants → Rhizosphere	28.30%
Rhizoplane	Host-Associated → Plants → Rhizoplane	23.58%
Sediment	Environmental → Aquatic → Sediment	4.72%
Floodplain	Environmental → Terrestrial → Floodplain	2.83%
Roots	Host-Associated → Plants → Roots	1.89%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	30.19%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	20.75%
Soil	Host-Associated → Plants → Rhizosphere → Soil	17.92%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	10.38%
Loam	Environmental → Terrestrial → Soil → Loam	8.49%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	4.72%
Sediment	Environmental → Terrestrial → Floodplain → Sediment	2.83%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	1.89%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	1.89%
Soil	Host-Associated → Plants → Rhizoplane → Soil	0.94%

Habitat	Taxonomy	Distribution
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	20.75%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	17.92%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	16.98%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	10.38%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	7.55%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	5.66%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	4.72%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	3.77%
Unclassified	Environmental → Terrestrial → Floodplain → Sediment → Unclassified	2.83%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	1.89%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	1.89%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	1.89%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	1.89%
Unclassified	Environmental → Terrestrial → Soil → Loam → Unclassified	0.94%
Unclassified	Host-Associated → Plants → Rhizoplane → Soil → Unclassified	0.94%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	13.21%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	12.26%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	10.38%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	6.60%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	5.66%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	4.72%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	3.77%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	3.77%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	3.77%
Sediment	Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment	2.83%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	2.83%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	2.83%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	1.89%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	1.89%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	1.89%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	1.89%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	1.89%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	1.89%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.89%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	1.89%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.89%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	1.89%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.94%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.94%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.94%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.94%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.94%
Soil	Environmental → Terrestrial → Soil → Loam → Unclassified → Soil	0.94%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere	0.94%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	0.94%
Switchgrass Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere	0.94%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004156	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1	Environmental	Open in IMG/M
3300005328	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG	Host-Associated	Open in IMG/M
3300005330	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG	Environmental	Open in IMG/M
3300005331	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG	Host-Associated	Open in IMG/M
3300005333	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG	Host-Associated	Open in IMG/M
3300005340	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG	Environmental	Open in IMG/M
3300005356	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG	Host-Associated	Open in IMG/M
3300005441	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG	Environmental	Open in IMG/M
3300005456	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG	Host-Associated	Open in IMG/M
3300005467	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG	Environmental	Open in IMG/M
3300005539	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2	Host-Associated	Open in IMG/M
3300005543	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG	Host-Associated	Open in IMG/M
3300005564	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG	Host-Associated	Open in IMG/M
3300005615	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-3 metaG	Environmental	Open in IMG/M
3300005617	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2	Host-Associated	Open in IMG/M
3300005618	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2	Host-Associated	Open in IMG/M
3300005719	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2	Host-Associated	Open in IMG/M
3300005841	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2	Host-Associated	Open in IMG/M
3300006031	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Angelo_100	Environmental	Open in IMG/M
3300006046	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_101	Environmental	Open in IMG/M
3300006237	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2)	Host-Associated	Open in IMG/M
3300006876	Agricultural soil microbial communities from Utah to study Nitrogen management - NC AS200	Environmental	Open in IMG/M
3300006881	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2	Host-Associated	Open in IMG/M
3300009176	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG	Host-Associated	Open in IMG/M
3300009177	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG	Host-Associated	Open in IMG/M
3300009551	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG	Host-Associated	Open in IMG/M
3300009610	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT700	Environmental	Open in IMG/M
3300010399	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3	Environmental	Open in IMG/M
3300010401	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-1	Environmental	Open in IMG/M
3300010403	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3	Environmental	Open in IMG/M
3300012909	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S149-409B-1	Environmental	Open in IMG/M
3300012916	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S213-509R-2	Environmental	Open in IMG/M
3300013308	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG	Host-Associated	Open in IMG/M
3300014325	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG	Host-Associated	Open in IMG/M
3300014969	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG	Host-Associated	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300017792	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG	Host-Associated	Open in IMG/M
3300017965	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 220 T	Environmental	Open in IMG/M
3300018083	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_5_b1	Environmental	Open in IMG/M
3300018469	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 T	Environmental	Open in IMG/M
3300018476	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 531 T	Environmental	Open in IMG/M
3300018481	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 356 T	Environmental	Open in IMG/M
3300019356	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S073-202C-2 (version 2)	Environmental	Open in IMG/M
3300022756	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_b1	Environmental	Open in IMG/M
3300023067	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S221-509R-5	Environmental	Open in IMG/M
3300025321	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025324	Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 10_1 (SPAdes)	Environmental	Open in IMG/M
3300025893	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025899	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025907	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025908	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025923	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025924	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025926	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025933	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025934	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025937	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025940	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025942	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025960	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026067	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026088	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026089	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026118	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300027533	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT700 (SPAdes)	Environmental	Open in IMG/M
3300028381	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300028812	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Vanillin_Day48	Environmental	Open in IMG/M
3300030635	Metatranscriptome of soil fungal communities from truffle orchard in Rollainville, France - Bnb4 (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300031200	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 9_S	Environmental	Open in IMG/M
3300031538	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D1	Environmental	Open in IMG/M
3300031562	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D3	Environmental	Open in IMG/M
3300031943	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D2	Environmental	Open in IMG/M
3300031944	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D1	Environmental	Open in IMG/M
3300032013	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D3	Environmental	Open in IMG/M
3300032157	Garden soil microbial communities collected in Santa Monica, California, United States - V. faba soil	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M
3300033811	Sediment microbial communities from East River floodplain, Colorado, United States - 28_j17	Environmental	Open in IMG/M
3300034148	Sediment microbial communities from East River floodplain, Colorado, United States - 18_j17	Environmental	Open in IMG/M
3300034690	Sediment microbial communities from East River floodplain, Colorado, United States - 60_j17	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Ga0062593_1000597531	3300004114	Soil	VLFDSPFDPVHVLWGAIGAILVLFVVARAWSRYHGPKDSSLGSVSDQWLAEQRLNRPDSQR*
Ga0062589_1025754972	3300004156	Soil	MNVLWVAIGASVAVFVVARAWSRHQWPKDSSLGSVSDQWLAEQRLNRPD
Ga0070676_108373001	3300005328	Miscanthus Rhizosphere	MVDPVTVLWSAIGASVALFVAARVWSRHQDSKDSSLGSVSEQWLAEQRLNRPDSQR*
Ga0070690_1000068523	3300005330	Switchgrass Rhizosphere	VADPVTVLWGAIGASVALFVAGRVWARYQGPKDPSLGSVSEQWLAEQRLNQPDSHR*
Ga0070670_1007081082	3300005331	Switchgrass Rhizosphere	VFDPVNVLWAAIGASVAVFVAARVWSRWYHGPKDSSLGSVSEQWLAEQRLNRPDSQR*
Ga0070677_100795693	3300005333	Miscanthus Rhizosphere	VVDQVNVLWGAIGASVAVFVVARVWSRYHDSKDSSLGSVSEQWLAEQRVNGPDSRR*
Ga0070677_101918081	3300005333	Miscanthus Rhizosphere	VFDPVNVLWGAIGASVAVFVVARAWSRYQGPKNSSLGSVSEQWLAEQRLNRPDSQR*
Ga0070677_108887672	3300005333	Miscanthus Rhizosphere	VFDLVSVLWAVIGASIALFAIVRVWSRLHSPKESSLGSISDQWLAEQRLNRPDSQR*
Ga0070689_1000735825	3300005340	Switchgrass Rhizosphere	VADPVTVLWGAIGASVALFVAGRVWARYQGPKDPSLGSVSEQWLAEERLNRPDSQR*
Ga0070689_1004538632	3300005340	Switchgrass Rhizosphere	FLSSASFWRSSVFDPVNVLWAAIGASVAVFVAARVWSRWYHGPKDSSLGSVSEQWLAEQRLNRPDSQR*
Ga0070689_1005723623	3300005340	Switchgrass Rhizosphere	MTVLTGVIGAGIALFLVARAWSHYQGPKDASLGSVSEQWLAEQRLNRPDSQR*
Ga0070674_1001990463	3300005356	Miscanthus Rhizosphere	CRDSTPVPVFDLVSVLWAVIGASIALFAIVRVWSRLHSPKESSLGSISDQWLAEQRLNRPDSQR*
Ga0070700_1007609392	3300005441	Corn, Switchgrass And Miscanthus Rhizosphere	EAAASWAGCSRLSWLLSSAGSSRSSVERPVVDQVNVLWGAIGASVAVFVVARVWSRYHDSKDSSLGSVSEQWLAEQRVNGPDSRR*
Ga0070700_1018262802	3300005441	Corn, Switchgrass And Miscanthus Rhizosphere	LSSASFWRSSVFDPVNVLWAAIGASVAVFVAARVWSRWYHGPKDSSLGSVSEQWLAEQRLNRPDSQR*
Ga0070678_1008669801	3300005456	Miscanthus Rhizosphere	VVDPVTVLWSAIGASAAVFVAVRLWARRQDSKGSSLGSVSEHWLAEQRLDQPDSNR*
Ga0070706_1012584552	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	VNVLWAAIGASVTVFVAARVWSRWYGGPKDSSLGSVSEHWLAEQRLNRPDSQR*
Ga0068853_1008192303	3300005539	Corn Rhizosphere	AWTRWLSVADPVTVLWGAIGASVALFVAGRVWARYQGPKDPSLGSVSEQWLAEQRLNQPDSHR*
Ga0070672_1016194351	3300005543	Miscanthus Rhizosphere	VFDLVSVLWAAVGASIAVFAIVRVWSRRHPKDSSLGTVSGQWLAEQRLNRPD
Ga0070664_1005438372	3300005564	Corn Rhizosphere	MPLFDPVNVLWAAIGASVGVFLAARAWSRWYLGPKNSSLGFVSDQWLAEQRLNRPNSQR*
Ga0070702_1012543812	3300005615	Corn, Switchgrass And Miscanthus Rhizosphere	MVDPVTVLWSAIGASVALFVAARVWSRHQDSKDSSLGSVSEQWLAEERLNRPDSQR*
Ga0068859_1011812081	3300005617	Switchgrass Rhizosphere	VFDPVSVLWAMIGASVAALVGARVWSRYQRPKESWLGSVSEQWLAEQRLNRPDSQR*
Ga0068864_1025750311	3300005618	Switchgrass Rhizosphere	VFDPVNLLWGAIGGTVAVLVMVRTWSRYQEPKDSSLGSVSEQWLAEQRLNRPDSQR*
Ga0068861_1012551942	3300005719	Switchgrass Rhizosphere	VNVLWGAIGASVAVFVVARVWSRYHDSKDSSLGSVSEQWLAEQRVNGPDSRR*
Ga0068863_1013890931	3300005841	Switchgrass Rhizosphere	VFDLVSVLWAAVGASIAVFAIVRVWSRRHPKDSSLGTVSGQWLAEQRLNRPDSQR*
Ga0068863_1018643982	3300005841	Switchgrass Rhizosphere	VFEPVNLLWGAIGGTVVVLVMVRTWSRYQEPKDSSLGSVSEQWLAEQRLNRPDSQR*
Ga0068863_1021557901	3300005841	Switchgrass Rhizosphere	VFDSPFDPVYVLWGAIGAIAVLFVVVRAWSRYLGPKDASLGSVSDQWLAEQRLNRPDSQR
Ga0066651_100762512	3300006031	Soil	MFDPVNVLWGAIGASLTLFVVARFWSRRQDPKDSSLGSVSEQWLAEQRLNRPDSQR*
Ga0066652_1003473102	3300006046	Soil	LWGAIGASLTLFVVARFWSRRQDPKDSSLGSVSEQWLAEQRLNRPDSQR*
Ga0097621_1004316792	3300006237	Miscanthus Rhizosphere	MFDPVNVLWGAIGAGLAVFFVARTWLRHRGPKNSSLGSVSEQWLAEQRLNRPDSHR*
Ga0079217_105516872	3300006876	Agricultural Soil	VFDPVTVVWAAIGASVAVFVAVRAWSRYLAPKDSSLGSVSEQWLAEQRLNRPDSQR*
Ga0068865_1005539203	3300006881	Miscanthus Rhizosphere	WTRWISVVDPVTVLWSAIGASAAVFVAVRLWARRQDSKGSSLGSVSEHWLAEQRLDQPDSNR*
Ga0068865_1005978872	3300006881	Miscanthus Rhizosphere	MFDPVNVLWAAIGASVAVFAVARAWSRRYQGPKDSSLGSVSEQWLAEQRLNRPDSHR*
Ga0105242_105724422	3300009176	Miscanthus Rhizosphere	SSSAGSSRSSVERPVVDQVDVLWGAIGASVAVFVVARVWSRYHDSKDSSLGSVSEQWLAEQRVNGLDSRR*
Ga0105248_100576214	3300009177	Switchgrass Rhizosphere	VFVPVNVLWGAIGASFAVFVVARAWSRYQGTKDSSLGTVSEQWLAEQRLNRPDSQR*
Ga0105248_126132891	3300009177	Switchgrass Rhizosphere	TVLWSAIGASAAVFVAVRLWARRQDSKGSSLGSVSEHWLAEQRLDQPDSNR*
Ga0105238_100066289	3300009551	Corn Rhizosphere	MNVLWATIGAGVAALVAARVWSRYQEPKDSWLGCVSEQWLAEQRLNRPDLRQ*
Ga0105340_10087242	3300009610	Soil	MFDPVNVVWAAIGASVAVFVVVRAWSRYQGPKDSSLGSVSEQWLAEQRLNRPDSQR*
Ga0134127_102450934	3300010399	Terrestrial Soil	VADPVTVLWGAIGASVALFVAGRVWARYQGPKDPSLGSVSEQWLAEQRINQPDSHR*
Ga0134127_105783492	3300010399	Terrestrial Soil	MNVLWGAIGASISLFVAARVWSRWYQGPKDSSLGSVSEQWLAEQRLNRPDSQR*
Ga0134121_119080202	3300010401	Terrestrial Soil	VFDPVNVLWAAIGASVVVFAAVHAWSRWYQGPKDSSLGSVSEQWLAEQRLNRPDSQR*
Ga0134123_100668845	3300010403	Terrestrial Soil	VADPVTVLWGAIGASVALFVAGRVWARYQGPKDPSLGSVSEQWLAEQRLN
Ga0157290_104265312	3300012909	Soil	VPVFDLVSVLWAVIGASIALFAIVRVWSRLHSPKESSLGSISDQWLAEQRLNRPDSQR*
Ga0157310_103282711	3300012916	Soil	RSPPWHLPVFDPVNVLWGSIGASVAVFVVARAWSRYQGPKNSSLGSVSEQWLAEQRLNRPDSQR*
Ga0157375_105520093	3300013308	Miscanthus Rhizosphere	VFDPVNVLWAAIGASVAVFAVARAWSRRYQGPKDSSLGSVSEQWLAEQRLNRPDYQR*
Ga0157375_122095282	3300013308	Miscanthus Rhizosphere	VVDPVTVLWSAIGASAAVFVAVRLWARRQDSKGSSLGSVSEHWLAEQRLDQ
Ga0157375_128232402	3300013308	Miscanthus Rhizosphere	AIGASAAVFVAVRLWARRQDSKGSSLGSVSEHWLAEQRLDQPDSNR*
Ga0163163_118348703	3300014325	Switchgrass Rhizosphere	VFDPVTVLWGAIGAGVAVFVAARVWSQYQGPKDASLGSVSEQWLAEQRLNRPDSQR*
Ga0157376_114053972	3300014969	Miscanthus Rhizosphere	MFDPVNVLWAAIGASVAVFAAARAWSRWYQGPKDSSLGSVSEQWLAEQRLNRPDSHR*
Ga0157376_129772492	3300014969	Miscanthus Rhizosphere	DPVTVLWSAIGASAAVFVAVRLWARRQDSKGSSLGSVSEHWLAEQRLDQPDSNR*
Ga0132258_125591133	3300015371	Arabidopsis Rhizosphere	VVDPVTVLWGAIGASVALFVAARVWSRHQDSKDSSLGSVSEQWLAEERLNRPDSQR*
Ga0132257_1038803192	3300015373	Arabidopsis Rhizosphere	RHWRRLRWISVVDPVTVLWSAIGASAAVFVAVRLWARRQDSKGSSLGSVSEHWLAEQRLDQPDSNR*
Ga0163161_102649191	3300017792	Switchgrass Rhizosphere	VADPVTVLWGAIGASVALFVAGRVWARYQGPKDPSLGSVSEQWLAEERLNRPDSQR
Ga0163161_115296172	3300017792	Switchgrass Rhizosphere	MFDPVNVLWGAIGAGLAVFFVARTWLRHRGPKNSSLGSVSEQWLAEQRLNRPDSHR
Ga0190266_101146062	3300017965	Soil	MFDPVNVLWGAIAASVAALVVARAWSRYRGPKDSSLGSVSEQWLAEQRLNRPDSQR
Ga0184628_1000026323	3300018083	Groundwater Sediment	VFDLVSVLWAAIGASIALFAIVRVWSRLHPPKDSSLGSVSDQWLAEQRLNRPDSQR
Ga0184628_1000026324	3300018083	Groundwater Sediment	VFDPVNVLWAAIGASLAVFVVARAWSRHQGSKDSSLGSVSEQWLAEQRLNRPDSQR
Ga0190270_104504371	3300018469	Soil	VFDTVNVLWGAIGASVAVFVVARAWSRYLGPKDSSLGSVSEQWLAEQRLNRPDSQR
Ga0190274_101471485	3300018476	Soil	VTVLWGAIGASLATFAVARAWLRYQGPKTSSLGFVSDQWLAEQRLNRPDSQR
Ga0190274_103801403	3300018476	Soil	MFDPVNVLWAAIGAGVAALVVVRAWARYRGPKDSSLGSVSEQWLAEQRLNRPDSQR
Ga0190274_112081843	3300018476	Soil	MAIPMFDPVTVLWGAIGASLAMFAIARAWLRYQGPKTASLGFVSDQWLAEQRLNRPDSQR
Ga0190271_103165912	3300018481	Soil	MRWTPSWHAVPVFDLVSVLWAVIGASIALFAIVRVWSRVHRPKESSLGSVSDQWLAEQRLDRPD
Ga0190271_108298282	3300018481	Soil	VFDPVTVVWAAIGASVAVFVAVRAWSRYLAPKDSSLGSVSEQWLAEQRLNRPDSQR
Ga0190271_111682491	3300018481	Soil	VFDPVTVLWGAIGASVAVFVVARAWSRYLGPQDSSLGSVSEQWLAEQRLNPPDSQR
Ga0190271_112517591	3300018481	Soil	VTVVWTAIGASVAVFLVARVWSRYQGPKDAALGSVSDQWLAEQRLNRPDSQR
Ga0173481_100362592	3300019356	Soil	VLFDSPFDPVHVLWGAIGAILVLFVVARAWSRYHGPKDSSLGSVSDQWLAEQRLNRPDSQ
Ga0222622_114682031	3300022756	Groundwater Sediment	MFDPVNVLWAAIGASVAVFAVARAWSRWYQGPKDSSLGSVSEQWLAEQRLNRPDSHR
Ga0247743_10696622	3300023067	Soil	VFDPVNVLWGAIGASVAVFVVARAWSRYQGPKNSSLGSVSEQWLAEQRLNRPDSQR
Ga0207656_100197532	3300025321	Corn Rhizosphere	VTLVVGWHLEQSVFDPMNVLWATIGAGVAALVAARVWSRYQEPKDSWLGCVSEQWLAEQRLNRPDLRQ
Ga0209640_107558112	3300025324	Soil	VTGVFDPVSVLWAAIGISVAAFVLVRAWSRHHAPRDSSMGTVSQQWLTEQRNNRPDSQ
Ga0207682_101063542	3300025893	Miscanthus Rhizosphere	VVDQVNVLWGAIGASVAVFVVARVWSRYHDSKDSSLGSVSEQWLAEQRVNGPDSRR
Ga0207642_107186781	3300025899	Miscanthus Rhizosphere	LSVADPVTVLWGAIGASVALFVAGRVWARYQGPKDPSLGSVSEQWLAEQRLNQPDSHR
Ga0207645_100865862	3300025907	Miscanthus Rhizosphere	MVDPVTVLWSAIGASVALFVAGRVWARYQGPKDPSLGSVSEQWLAEQRLNQPDSHR
Ga0207643_100554302	3300025908	Miscanthus Rhizosphere	MPLFDPVNVLWAAIGASVGVFLAARAWSRWYLGPKNSSLGFVSDQWLAEQRLNRPNSQR
Ga0207643_100730802	3300025908	Miscanthus Rhizosphere	VFDPVNVLWAAIGASVAVFVAARVWSRWYHGPKDSSLGSVSEQWLAEQRLNRPDSQR
Ga0207681_103128161	3300025923	Switchgrass Rhizosphere	ASIALFAIVRVWSRLHSPKESSLGSISDQWLAEQRLNRPDSQR
Ga0207694_100480162	3300025924	Corn Rhizosphere	MNVLWATIGAGVAALVAARVWSRYQEPKDSWLGCVSEQWLAEQRLNRPDLRQ
Ga0207659_100226573	3300025926	Miscanthus Rhizosphere	VFDLVSVLWAVIGASIALFAIVRVWSRLHSPKESSLGSISDQWLAEQRLNRPDSQR
Ga0207659_100649292	3300025926	Miscanthus Rhizosphere	VVDPVTVLWSAIGASAAVFVAVRLWARRQDSKGSSLGSVSEHWLAEQRLDQPDSNR
Ga0207706_114577072	3300025933	Corn Rhizosphere	IGASVALFVAGRVWARYQGPKDPSLGSVSEQWLAEQRLNQPDSHR
Ga0207686_104437442	3300025934	Miscanthus Rhizosphere	MVDPVTVLWSAIGASVALFVAARVWSRHQDSKDSSLGSVSEQWLAEQRLNRPDSQR
Ga0207669_103742402	3300025937	Miscanthus Rhizosphere	VNVLWGAIGASVAVFVVARVWSRYHDSKDSSLGSVSEQWLAEQRVNGLDSRR
Ga0207669_116112671	3300025937	Miscanthus Rhizosphere	VFDPVNVLWGAIGASVAVFVAARAWSRYQGPKNSSLGSVSEQWLAEQRLNRPDSQR
Ga0207691_112886721	3300025940	Miscanthus Rhizosphere	VFDLVSVLWAAVGASIAVFAIVRVWSRRHPKDSSLGTVSGQWLAEQRLNRPDSQR
Ga0207689_100965442	3300025942	Miscanthus Rhizosphere	VVDPVHVLWAAIGVSVAVFVVARIWLRRFQGPKDSALGSVSEQWLAEQRLNRPDSQR
Ga0207651_105107342	3300025960	Switchgrass Rhizosphere	MVDPVTVLWSAIGASVALFVAARVWSRHQDSKDSSLGSVSEQWLAEERLNRPDSQR
Ga0207678_100590232	3300026067	Corn Rhizosphere	VNVLWGAIGASVAAFVLVRLWSRYQEPNDASLGSVSEQWLAEQRLNRPDSQR
Ga0207641_102236472	3300026088	Switchgrass Rhizosphere	MFDPVNVLWAAIGASVAVFAVARAWSRRYQGPKDSSLGSVSEQWLAEQRLNRPDSQR
Ga0207641_125061811	3300026088	Switchgrass Rhizosphere	VFEPVNLLWGAIGGTVVVLVMVRTWSRYQEPKDSSLGSVSEQWLAEQRLNRPDSQR
Ga0207648_106737761	3300026089	Miscanthus Rhizosphere	VVDPVTVLWSAIGASAAVFVAVRLWARRQDSKGSSLGSVSEHWLAEQRLDQPD
Ga0207675_1006809302	3300026118	Switchgrass Rhizosphere	VNVLWAAIGATVAVFLAARAWSRYQGPKDSSLGSVSEQWLAEQRLNRPDSQR
Ga0208185_10128661	3300027533	Soil	MFDPVNVVWAAIGASVAVFVAVRAWSRYQGPKDSSLGSVSEQWLAEQRLNRPD
Ga0268264_103498673	3300028381	Switchgrass Rhizosphere	VADPVTVLWGAIGASVALFVAGRVWARYQGPKDPSLGSVSEQWLAEQRLNQPDSHR
Ga0268264_123815232	3300028381	Switchgrass Rhizosphere	WWLPCFLSSASFWRSSVFDPVNVLWAAIGASVAVFVAARVWSRWYHGPKDSSLGSVSEQWLAEQRLNRPDSQR
Ga0247825_103793861	3300028812	Soil	VFDLVSVLWAVIGASIALFAIVRVWSRLHTPKESSLGSVSDQWLAEQRLDRPDSHR
Ga0247627_103049153	3300030635	Soil	VFDPVNVLWAAIVASGGVFFVARSWSRWYQGPKDSSLGSVSQQWLTEQRMK
Ga0307496_100845912	3300031200	Soil	MFDPVNVLWGSVGASVAVFVLARFWSRHHPKDSSLGSVSEQWLAEQRLNRPDSQR
Ga0310888_102160521	3300031538	Soil	VFDLVSVLWAVIGASIALFAIVRVWSRLHSPKESSLGSISDQWLAEQRL
Ga0310886_102780603	3300031562	Soil	GASIALFAIVRVWSRLHSPKESSLGSISDQWLAEQRLNRPDSQR
Ga0310885_102078742	3300031943	Soil	VFDLVSVLWAVIGASIALFAIVRVWSRLHSPKESSLGSISDQWLAEQRLNR
Ga0310884_109705442	3300031944	Soil	VNVLWGAIGASVAVFVVARVWSRYHDSKDSSLGSVSEQWLAEQRVNGPDSRR
Ga0310906_109025611	3300032013	Soil	VNVLWGAIGASIAVFVIARAWSRYQGPKDSSLGSVSDQWLAEQRLNRPDSQR
Ga0315912_104943582	3300032157	Soil	VFEPTTVLWTAIGASLVVFVVTRTWSRWQQGPENSSLGSVSDQWLAEQRLNRPDSQR
Ga0307472_1027540742	3300032205	Hardwood Forest Soil	VSFDSAFDPVNVLWGAIGAILVVFVVARGWSRYLGPKDSSLGSVSDRWLAEQRLHRPDSQ
Ga0364924_150932_357_527	3300033811	Sediment	MFDPVNVVWAAIGASVAVFVAVRAWSRYQGPKDSSLGSVSEQWLAEQRLNRPDSQR
Ga0364927_0038394_836_1006	3300034148	Sediment	MFDPVNVVWAAIGASVAVFVVVRAWSRYQGPKDSSLGSVSEQWLAEQRLNRPDSQR
Ga0364923_0231743_49_219	3300034690	Sediment	MFDPVNVVWAAIGASVAVLVVVRAWSRYQGPKDSSLGSVSEQWLAEQRLNRPDSQR

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F094034

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences