Scaffold Ga0207668_10787792

Overview

Basic Information

• Taxon OID: 3300025972
• Scaffold ID: Ga0207668_10787792
• Source Dataset Name: Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 841
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan, Kellogg Biological Station
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000280	Metagenome / Metatranscriptome	1383	Y
F001079	Metagenome / Metatranscriptome	785	Y
F007262	Metagenome / Metatranscriptome	354	Y
F066970	Metagenome / Metatranscriptome	126	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207668_107877921	F007262	N/A	GIYHADQFGGYTTEAAGPATRFFLLFTLIVTGWAVALIVGHLVWGQKF
Ga0207668_107877922	F001079	AGAAG	MAATEIPIQSVLPYVSWSSLTIAAIPADAWPLVFGSMQALKGHVQEYPGCQKLEAFVHAEAEGAVRVHCYTTWDTPEQLEAFLERGYTFERMLVDVVGITAQPTLVMEKVF
Ga0207668_107877923	F000280	AGAAGG	MAAQEPDQERRPAPARPLVGYRDVGEDVRHSRSAMTRAWVILAVLMALYLGWTLVVYFLEPGLR
Ga0207668_107877924	F066970	N/A	VYVRHVTSLQFLTYLSFFAVLLAAMFRFVPGRTPPTRDEPYSDEELHAHDR