Scaffold Ga0207651_10497310

Overview

Basic Information

• Taxon OID: 3300025960
• Scaffold ID: Ga0207651_10497310
• Source Dataset Name: Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1053
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Saprospiria → Saprospirales → Saprospiraceae → unclassified Saprospiraceae → Saprospiraceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan, Kellogg Biological Station
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F052663	Metagenome	142	Y
F063734	Metagenome	129	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207651_104973101	F052663	N/A	RLYVTTPVTAVQLTVALVAVIPDEVKPVGVPQVAAVVNDVELLNELEPAEQTV
Ga0207651_104973102	F052663	N/A	MIALVVVMPEDVNPVGMPQLATVVNDVELLKELEPAEHIV
Ga0207651_104973103	F063734	N/A	MLEEVKPVGVGQLTIVVNDAGALYAPDPAEQTVCTWNWYAVPAVSPVKVREVVVMPLTVV