Scaffold Ga0207661_10000162

Overview

Basic Information

• Taxon OID: 3300025944
• Scaffold ID: Ga0207661_10000162
• Source Dataset Name: Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 43178
• Total Scaffold Genes: 45
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 29 (64.44%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan, Kellogg Biological Station
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F023537	Metagenome	209	Y
F033846	Metagenome	176	Y
F054118	Metagenome	140	Y
F059082	Metagenome	134	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207661_1000016227	F023537	N/A	MSGFVLIAAMSLVILHRVDGGEVAVSPSHITSMHSRAPANPQNKLVTGEARCIVWLADGKLLSVLEPCETVKRLMDTVGAAQK
Ga0207661_1000016234	F059082	GGA	MTLAQVLASVDRDSRDALIEDVEDALLGHTPAEVFLAMAYFLALAIDRMRCTDCEALIDDMPEILRSVIRHESDTVTLQ
Ga0207661_1000016240	F033846	GAGG	MAEPPPPNRAVVSDDGHRIRISVYVAGVEAPPGVAELPLEVAARLAADLAGAVASHLARERNHRVGVVRGPAK
Ga0207661_1000016241	F054118	GAGG	VSDDADVAALGEEADALLDHIMPLLAGQSAELQGAVITDLAAIWIAGHRVAGDRAEGDCMRAELLQMHTQHVRELVEMYLEGVDG