Scaffold Ga0207661

Basic Information
Taxon OID	3300025944 Open in IMG/M
Scaffold ID	Ga0207661_10000004 Open in IMG/M
Source Dataset Name	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300025944 Open in IMG/M

Scaffold ID

Ga0207661_10000004 Open in IMG/M

Source Dataset Name

Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	606391
Total Scaffold Genes	507 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	284 (56.02%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (25.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

606391

Total Scaffold Genes

507 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

284 (56.02%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (25.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location Name	USA: Michigan, Kellogg Biological Station
Coordinates	Lat. (^o)	42.3948	Long. (^o)	-85.3738	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Michigan, Kellogg Biological Station

Coordinates

Lat. (^o)

42.3948

Long. (^o)

-85.3738

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F002338	Metagenome / Metatranscriptome	569	Y
F037774	Metagenome	167	Y
F101406	Metagenome / Metatranscriptome	102	Y
F105410	Metagenome / Metatranscriptome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0207661_10000004156	F002338	N/A	MQELKAEKPPESPADSDPATRLMARLVEEGFTTDLTDEDWRSYGEIIYRRAEKISFAAGETIFIFTRVHDLNERILRQTSDSVVNSYKARSLGGKALSVLQSTTVYHCLVADGDQPHNDLLTGYVTRAGGATFIPVIIVPDINQVIYPDLEEKVASVRPRIEYLQYLLGERRETVNMHRPTVQAMWVSLGVVLLLLLAIAVSLIH
Ga0207661_10000004196	F101406	GAGG	VCQTERMLRVSRGFIAAIGGIAMTLLAWFGSWAWPGWPASFAIDLLGFADFADFPRYAKSAVVVLLIIINVGTWAAVIRAAMMLIRKSSSPTAP
Ga0207661_10000004339	F037774	N/A	VRIAPPPRNEVNFATVDSPSLQFLPRQQEAQIWKLDEDPIVIPGDHLNTYLGPVDAPQFARYETLDLAIGKYSTPGGNGFATVEIYRFPDFVKAFGAYSKQKNGNLRFLDIPNESFAKAHSVHVWRGPFYVRITGASDGDKVLRLATFVADKMPPAPSKPAVFAFLPDKQRVPGSERYSADSAFGQRFLANSFQSTFNVDNDLIDGIVIPAANKQAASNILDQYKMLYLHNGKLLDPIPNLGEDNFTAEDRYLGRVVAFRIDRFVIAFNGYRDRQHLVDLATAADQRILGTIRKQLVTADKQAENAENGNTSTVPAWMQNKH
Ga0207661_10000004499	F105410	N/A	MAVETYDWIDTTNLSALVANFARVHMFLSMFDGDPQKWIEFLEWNGTDEERRRDLPFAEDLKRRIADDPEYLDRLRHLVRDFSTLV

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0207661_10000004

Overview

Ecosystem & Geography

Associated Families

Sequences