Scaffold Ga0207661_10000002

Overview

Basic Information

• Taxon OID: 3300025944
• Scaffold ID: Ga0207661_10000002
• Source Dataset Name: Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 816104
• Total Scaffold Genes: 780
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 443 (56.79%)
• Novel Protein Genes: 14
• Novel Protein Genes with Ribosome Binding Sites (RBS): 8 (57.14%)
• Associated Families: 14

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan, Kellogg Biological Station
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001519	Metagenome / Metatranscriptome	679	Y
F002324	Metagenome	571	Y
F002548	Metagenome / Metatranscriptome	549	Y
F003710	Metagenome / Metatranscriptome	473	Y
F006090	Metagenome	382	Y
F008503	Metagenome	332	Y
F009860	Metagenome / Metatranscriptome	312	Y
F013826	Metagenome / Metatranscriptome	268	Y
F014455	Metagenome / Metatranscriptome	263	Y
F022212	Metagenome	215	Y
F043999	Metagenome / Metatranscriptome	155	Y
F081482	Metagenome / Metatranscriptome	114	Y
F095945	Metagenome	105	Y
F101403	Metagenome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207661_10000002175	F043999	N/A	MEKPVRRILLPGVSDAGAPPPVVIDSRVVVARARRRAIVRDVIDLLLLVCVDGLFLRWPHAHVPLLDRYDSLLVLLGLNAMLVGYVWLARALPRWTARRVASTWCLAERTRFFRSTAR
Ga0207661_10000002309	F006090	N/A	MSLLAQRKGPAAPLPRLEGKEVLVGPNPDAAKVKGVMFGGRKQFLNEVAGEEGFAAIVAKLSPRTASYTKTPLASSWCEFASLIELDRTTYETLKQKYPNVLALIGAASAELGIGRVYKSLDSTELVKFMESQALFHNQFQKFGNVRFDKTPNGGRMTCSDYPVYSPIYCASAVGFYLESILRHGGTDPSVVETKCQTLGDSHCSFEMTWR
Ga0207661_10000002365	F081482	AGG	VVESQFGLLNAVQRPQVTMLGREAYSTFPDKVAAFLFALLINSPFKGGNRRVALASLFAFCELNNRTVDSRLLDEKAAENLFKRAAGHRELGIPPENVFREIRETMTRAIMPLS
Ga0207661_10000002367	F003710	N/A	MLIKGMTEQEIRVLQEFRRLAVESLGIAAIKGIKHPAGGGEGPAFSLVDKGMLTTDAARENFSLTEKAKEFLSYDPKPEFEEAGSAVEEPVVVE
Ga0207661_10000002414	F001519	GGAG	MTLVNSLCAEISIYQGVGEQTGVMVERSAIRGKKGLCKSMRDLAIKSRVLGDGYYYIPNELWPKTDEPVVVHKHDWTVIGSIPRTSRATKKRPKRAHAEQL
Ga0207661_1000000246	F013826	AGGAGG	MAVCWRCPSCSEISCEDDVHVTGNPVACDHCERPFPQQETLCTVCDAPNPWIRRDTLHFLCRECGTAQTYFSHLPMAG
Ga0207661_100000025	F008503	N/A	MKKTLIVVALIALVVWVISWFRVPEAVKTSAAKPWPGGGSLDSVDNRFPQSQANAASAKLMALANALPKNDAIGAFVSRETARGELTVGGSPSLPDVTAVRELLLREPVVWQRREGIGGGNDLNAERAAQMSMARALVASALVKARANDPAAWDDLHAAWNLARSLDGHPQMMVRTAAMTIARMINAAAWKMPLPAPAWFGELQQRDAVPQLLESYQFQTASYAKDGLRLFPTKMLADSVDRDRGIAEELAKETRCDVKPRANELGVDLTSVWRRAFRFRAEREATANALRAREGHPIERASRCSDGQWTFDATTVRFTHDIAPVAPDRGMPLALRVTP
Ga0207661_10000002586	F095945	GGA	MIAVLAFFFATAFPSTSKTSWMRPESFHLTIGMNRAEAVKALESNGWKTKKGDSAGQILVDYADDKSLTLQFAGERLTSIRFELFTILQEAPKAFEEERVFLRESLGKPRKATKKVVIYDHKLPNVMAVLSADPKSEQAQKGVGMLVVRYYDPVK
Ga0207661_10000002625	F002324	GGAGG	MGEIKLFQVCYEGELTLAVSEAMRRLGAEPNFDQSWNVWLPEGGHAELLVRYLRIEVGDEARVLIGCSQFTSTRDFLLIRHSLTPGADYSELHDAIGRLGVVVDLPFESTFVVQSDDRTDVNTLGMALGELCPDDALFVTGISHDWAYCDGTTSRMYVAEQEPKSIQFRTF
Ga0207661_10000002649	F014455	AGGAGG	MLHFLKKLLMFRVGQKTTRGVARSIGLGKIATVVGLIGGYKHMRKHA
Ga0207661_10000002684	F101403	AGG	VSWLASLPHQIPFRAASAATRIDDKTIEGLYVCTADDRMPPSVMAVEAMAQLGGGLAFTSQGFLTGIDRCEVDRAIEAGDVIRFVVTLDANFGGTFRFTGSGAIDGVEVIRGRFYLASPP
Ga0207661_1000000269	F002548	GAG	MSKYAMDSTMEVRSPIFERRRLRRIRMIVELTLNLVGSDMTVSHREARCLVRCARKAILELHPGFEQRYERIVRPYFERVLASRWPHEQALDDDCCDVVN
Ga0207661_1000000272	F022212	N/A	MRRVLILVALAAVSCGGGSSDATDNSSEWLHVLRHKQAASAPNAPVHAKQAYADTLGAFVAKHPTHSRAREVYEHIQLDFAHELGVVGRHQDAIRIYRAVLTHDPRNEAALKGLADSVDHLAVSHEKLASLEKGMSQRDVAHLLGKPIPGWTITNDRPDSTIESWYYRRTGGGIAGVYFRDGVLFAAEENSQAKIAPLMKQ
Ga0207661_10000002746	F009860	N/A	MPTSIRQIEFLARSIVNRLEDRGLVEFGDAEIGIDVVTKTLEDNFAAYDAIEAEARIRLTKSIGSREPSDIEVTEAMKRVAAERNVTL