Scaffold Ga0207711_10016871

Overview

Basic Information

• Taxon OID: 3300025941
• Scaffold ID: Ga0207711_10016871
• Source Dataset Name: Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6064
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (62.50%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → Pyrinomonas → Pyrinomonas methylaliphatogenes (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: Michigan, USA
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000719	Metagenome	923	Y
F089395	Metagenome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207711_100168711	F089395	AGGAG	MYRFRLNLLLLVAIATLASISIHAQEVEDTIRIKTRVVFLDALVKDKRT
Ga0207711_100168712	F000719	GAGG	MSTIRTLIVAVVLLCVTCVSVVQGKGDDFNSVVKMIEQFYGVKHEEIPFLAKAGMKVARTAARIKGGTARRIAEAGSIKLAVFENQDFNGEFIKFRNSLNGALNQTWQPLIQTLSATEEEQTYIFLREAGEKFNVLVVTIEPRDATVVQVNVSPKNLAILLKDPEGTGKAITEEATIIDQ