NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207706_10114323

Scaffold Ga0207706_10114323


Overview

Basic Information
Taxon OID3300025933 Open in IMG/M
Scaffold IDGa0207706_10114323 Open in IMG/M
Source Dataset NameCorn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2374
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Andropogonodae → Andropogoneae → Tripsacinae → Zea → Zea mays(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameUSA: Michigan, Kellogg Biological Station
CoordinatesLat. (o)42.3948Long. (o)-85.3738Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F039980Metagenome / Metatranscriptome162Y
F065522Metagenome127N
F096761Metagenome / Metatranscriptome104Y

Sequences

Protein IDFamilyRBSSequence
Ga0207706_101143231F039980AGGAGLQEEKRILAASRDNLDRLYRDSSNSLTILERSHRFTMEELDNQRCRLQESVDEVTRLKQLISAKDATIKELRASKKTIAQELEAARLAAKVAEETAATLKAQRDKAMDKAIRAGRILMRRPDVVVPEDIKADVNATPDSSNRPSSSVVPEKDIGK
Ga0207706_101143232F065522N/AVPFFFSSPLLWTVLPSDLVLFDYFLLGMTRQIAILEEKHSRDQAEMVQRCADFEEKYSQSQTELNQVSAALDDANALSSSLHARLDSEKVTYKTVPCLAMFLLLAWFLKELIFVCRKKNVSLLLLVTI
Ga0207706_101143233F096761GGTGGMASQLRLQGASVPEVASSLACWNPVSLHRRVSELEATNAG

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