Scaffold Ga0207706_10114323

Overview

Basic Information

• Taxon OID: 3300025933
• Scaffold ID: Ga0207706_10114323
• Source Dataset Name: Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2374
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Andropogonodae → Andropogoneae → Tripsacinae → Zea → Zea mays (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan, Kellogg Biological Station
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F039980	Metagenome / Metatranscriptome	162	Y
F065522	Metagenome	127	N
F096761	Metagenome / Metatranscriptome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207706_101143231	F039980	AGGAG	LQEEKRILAASRDNLDRLYRDSSNSLTILERSHRFTMEELDNQRCRLQESVDEVTRLKQLISAKDATIKELRASKKTIAQELEAARLAAKVAEETAATLKAQRDKAMDKAIRAGRILMRRPDVVVPEDIKADVNATPDSSNRPSSSVVPEKDIGK
Ga0207706_101143232	F065522	N/A	VPFFFSSPLLWTVLPSDLVLFDYFLLGMTRQIAILEEKHSRDQAEMVQRCADFEEKYSQSQTELNQVSAALDDANALSSSLHARLDSEKVTYKTVPCLAMFLLLAWFLKELIFVCRKKNVSLLLLVTI
Ga0207706_101143233	F096761	GGTGG	MASQLRLQGASVPEVASSLACWNPVSLHRRVSELEATNAG